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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-03-14 18:29:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a012M08_T7.
AM390522.1:137-156
TCTCTCCATCACCTCCGCGTTGAATCCGCA137GACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAACAAGAAACGGAAGA
11FGYSDB_UP_003_F08_16OCT2003_054 Brassica seedling 11FGYSDB Brassica napus cDNA 5', mRNA sequence.
CN729356.1:210-229
TCTCTCCATCACCTCCGCGTTGAATCCGCA210GACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAACAAGAAACGGAAGA
Brassica oleracea var. viridis mRNA, clone: KALE-002J13, 5' end sequence.
DK456555.1:213-232
TCTCTCCATCACCTCCGCGTTGAATCCGCA213GACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAACAAGAAACGGAAGA
Brassica oleracea var. viridis mRNA, clone: KALE-010O15, 5' end sequence.
DK459724.1:216-235
TCTCTCCATCACCTCCGCGTTGAATCCGCA216GACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAACAAGAAACGGAAGA
Brassica oleracea var. viridis mRNA, clone: KALE-029F06, 5' end sequence.
DK466755.1:216-235
TCTCTCCATCACCTCCGCGTTGAATCCGCA216GACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAACAAGAAACGGAAGA
Brassica oleracea var. viridis mRNA, clone: KALE-117M20, 5' end sequence.
DK500597.1:213-232
TCTCTCCATCACCTCCGCGTTGAATCCGCA213GACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAACAAGAAACGGAAGA
Brassica oleracea var. viridis mRNA, clone: KALE-148O16, 5' end sequence.
DK512488.1:216-235
TCTCTCCATCACCTCCGCGTTGAATCCGCA216GACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAACAAGAAACGGAAGA
37RDBRH_UP_025_A10_25JUN2004_080 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence.
EE524123.1:218-237
TCTCTCCATCACCTCCGCGTTGAATCCGCA218GACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAGCAAGAAACGGAAGA
BNZB_RP_027_A02_28APR2004_016 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
EE558220.1:243-262
TCTCTCCATCACCTCCGCGTTGAATCCGCA243GACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAACAAGAAACGGAAGA
65JKBNM0_T3_013_E10_17MAR2005_072 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL587799.1:192-211
TCTCTCCATCACCTCCGCGTTGAATCCGCA192GACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAACAAGAAACGGAAGA
BR065062 silique cDNA library KBSP Brassica rapa subsp. pekinensis cDNA clone KBSP-045G01 5', mRNA sequence.
EX080418.1:183-202
TCTCTCCATCACCTCCGCGTTGAATCCACA183GACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAACAAGAAACGGAAGA
BR066386 silique cDNA library KBSP Brassica rapa subsp. pekinensis cDNA clone KBSP-067A01 5', mRNA sequence.
EX081742.1:84-103
TCTCTCCATCACCTCCGCGTTGAATCCACA84GACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAACAAGAA
BR066640 silique cDNA library KBSP Brassica rapa subsp. pekinensis cDNA clone KBSP-070C02 5', mRNA sequence.
EX081996.1:83-102
TCTCTCCATCACCTCCGCGTTGAATCCACA83GACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAACAAGAAACGGAAGA
BR091324 seed and seedling cDNA library KFSD Brassica rapa subsp. pekinensis cDNA clone KFSD-041G09 5', mRNA sequence.
EX105034.1:212-231
TCTCTCCATCACCTCCGCGTTGAATCCACA212GACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAANAAGAAACGGAAGA
BR100366 whole plant cDNA library KFYP Brassica rapa subsp. pekinensis cDNA clone KFYP-112B02 5', mRNA sequence.
EX114076.1:207-226
TCTCTCCATCACCTCCGCGTTGAATCCACA207GACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAACAAGAAACGGAAGA
BR103751 cotyledon cDNA library KHCT Brassica rapa subsp. pekinensis cDNA clone KHCT-32A01 5', mRNA sequence.
EX119921.1:217-236
TCTCTCCATCACCTCCGCGTTGAATCCACA217GACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAACAAGAAACGGAAGA
RR4BM74TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EX770014.1:196-215
TCTCTCCATCACCTCCGCGTTGAATCCTCA196GACGAAGAAAGCTTCAACGGGTGGTAGTAACGGGAACGGTGGTAGTACCA
RR3DQ43TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EY915113.1:42-61
TCTCTCCATCACCTCCGCGTTGAATCCTCA42GACGAAGAAAGCTTCAACGGGTGGTAGTAACGGGAACGGTGGTAGTACCA
RS1FS25TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD937553.1:206-225
TCTCTCCATCACCTCCGCGTTGAATCCTCA206GACGAAGAAAGCTTCAACGGGTGGTAGTAACGGGAACGGTGGTAGTACCA
Raphanus sativus mRNA, clone: RSCS14C11, 5' end sequence.
FY450780.1:177-196
TCTCTCCATCACCTCCGCGTTGAATCCTCA177GACGAAGAAAGCTTCAACGGGTGGTAGTAACGGGAACGGTGGTAGTACCA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_14949.
FX742569.1:221-240
TCTCTCCATCACCTCCGCGTTGAATCCTCA221GACGAAGAAAGCTTCAACGGGTGGTAGTAACGGGAACGGTGGTAGTACCA
KBrH018J22F KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH018J22, genomic survey sequence.
DX890766.1:162-181
TCTCTCCATCACCTCCGCGTTGAATCCACA162GACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAACAAGAAACGGAAGA
KBrH045M24F KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH045M24, genomic survey sequence.
DX909577.1:819-838
TCTCTCCATCACCTCCGCGTTGAATCCACA819GACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAACAAGAAACGGAAGA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS004O21, complete sequence.
AC189637.2:43608-43627
TCTCTCCATCACCTCCGCGTTGAATCCACA43608GACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAACAAGAAACGGAAGA
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:2215938-2215957
TCTCTCCATCACCTCCGCGTTGAATCCGCA2215938GACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAGCAAGAAACGGAAGA
Brassica napus genome assembly, chromosome: A01.
HG994355.1:2173634-2173653
TCTCTCCATCACCTCCGCGTTGAATCCGCA2173634GACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAGCAAGAAACGGAAGA
Brassica napus genome assembly, chromosome: C01.
HG994365.1:2772313-2772332
TCTCTCCATCACCTCCGCGTTGAATCCGCA2772313GACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAACAAGAAACGGAAGA
Brassica rapa genome, scaffold: A01.
LR031571.1:2148785-2148804
TCTCTCCATCACCTCCGCGTTGAATCCGCA2148785GACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAGCAAGAAACGGAAGA
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:2707258-2707277
TCTCTCCATCACCTCAGCGTTGAATCCGCA2707258GACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAACAAGAAACGGAAGA
Raphanus sativus genome assembly, chromosome: 5.
LR778314.1:2324983-2325002
TCTCTCCATCACCTCCGCGTTGAATCCTCA2324983GACGAAGAAAGCTTCAACGGGTGGTAGTAACGGGAACGGTGGTAGTACCA
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:2148941-2148960
TCTCTCCATCACCTCCGCGTTGAATCCGCA2148941GACGAAGAAAGCTTCAACGGGTAGTGGTGGGACCAGCAAGAAACGGAAGA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_5860.
FX664811.1:952-971
TGGTACTACCACCGTTCCCGTTACTACCAC952CCGTTGAAGCTTTCTTCGTCTGAGGATTCAACGCGGAGGTGATGGAGAGA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_11614.
FX704325.1:1030-1049
TCTTCCGTTTCTTGTTGGTCCCACCACTAC1030CCGTTGAAGCTTTCTTCGTCTGTGGATTCAACGCGGAGGTGATGGAGAGA
TSA: Raphanus sativus RS02336 mRNA sequence.
JT786883.1:4856-4875
TGGTACTACCACCGTTCCCGTTACTACCAC4856CCGTTGAAGCTTTCTTCGTCTGAGGATTCAACGCGGAGGTGACTGGAGAG
TSA: Raphanus sativus RS02337 mRNA sequence.
JT786884.1:2684-2703
TGGTACTACCACCGTTCCCGTTACTACCAC2684CCGTTGAAGCTTTCTTCGTCTGAGGATTCAACGCGGAGGTGACTGGAGAG
TSA: Raphanus sativus RS02339 mRNA sequence.
JT786886.1:816-835
TGGTACTACCACCGTTCCCGTTACTACCAC816CCGTTGAAGCTTTCTTCGTCTGAGGATTCAACGCGGAGGTGACTGGAGAG
BOIBO33TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIBO33, genomic survey sequence.
CC958147.1:319-338
TCTTCCGTTTCTTGTTGGTCCCACCACTAC319CCGTTGAAGCTTTCTTCGTCTGCGGATTCAACGCGGAGGTGATGGAGAGA
KBrH125O16 genomic clone, KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis.
CT016104.1:813-832
TCTTCCGTTTCTTGTTGGTCCCACCACTAC813CCGTTGAAGCTTTCTTCGTCTGTGGATTTCACGCGGAGGTGATGG
KBrH093A10R Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH093A10, genomic survey sequence.
DU118730.1:751-770
TCTTCCGTTTCTTGTTGGTCCCACCACTAC751CCGTTGAAGCTTTCTTCGTCTGTGGATTCAACGCGGAGGTGATGGAGAGA
Raphanus sativus DNA, clone: RSDH33K02_FP-1.
GA890021.1:279-298
TGGTACTACCACCGTTCCCGTTACTACCAC279CCGTTGAAGCTTTCTTCGTCTGAGGATTCAACGCGGAGGTGATGGAGAGA
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:54329119-54329138
TCTTCCGTTTCTTGTTGGTCCCACCACTAC54329119CCGTTGAAGCTTTCTTCGTCTGCGGATTCAACGCGGAGGAGATGGAGAGA
Raphanus sativus genome assembly, chromosome: 2.
OY743208.1:41293153-41293172
TGGTACTACCACCGTTCCCGTTACTACCAC41293153CCGTTGAAGCTTTCTTCGTCTGAGGATTCAACGCGGAGGTGATGGAGAGA
Pyrrhosoma nymphula genome assembly, chromosome: 4.
OY754330.1:33006399-33006418
GTTTCCCCGCGTCTCTATTCCTGAGGTAGT33006399CCGTTGAAGCTTTCTTCGTCGTTTCCTTCGCCAGTATTAAAAATTCCAGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GACGAAGAAAGCTTCAACGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GACGAAGAAAGCTTCAACGG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.402 | 1.393 | search_plus_done; http://172.18.8.135:50400/match?q=GACGAAGAAAGCTTCAACGG&k=0&no_gap=0&offset=0&limit=50
1.695 | 0.293 | search_minus_done; http://172.18.8.135:50400/match?q=CCGTTGAAGCTTTCTTCGTC&k=0&no_gap=0&offset=0&limit=19
1.703 | 0.008 | cgi_end;

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