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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-15 20:17:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RR3B136JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EV546146.1:218-237
TTCTTCATCCCATTCATCGCTCTTGTATGA218GACGAGGGTGTCCACTTTGTGAATCTTGGTATCAAAACCGTGTAGCTTAA
RS3AR74JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EW737678.1:225-244
TTCTTCATCCCATTCATCGTTCTTGTATGA225GACGAGGGTGTCCACTTTGTGAATCTTGGTATCAAAAACGTGTAGCTTAA
RR1EE20JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EY896538.1:323-342
TTCTTCATCCCATTCATCGTTCTTGTATGA323GACGAGGGTGTCCACTTTGTGAATCTTGGTATCAAAACCGTGTAGCTTAA
RR3EG33JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD544396.1:196-215
TTCTTCATCCCATTCATCGTTCTTGTATGA196GACGAGGGTGTCCACTTTGTGAATCTTGGTATCAAAACCGTGTAGCTTAA
RS2FI04JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD574683.1:208-227
TTCTTCATCCCATTCATCGTTCTTGTATGA208GACGAGGGTGTCCACTTTGTGAATCTTGGTATCAAAACCGTGTAGCTTAA
RS3GT95JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
FD952977.1:236-255
TTCTTCATCCCATTCATCGTTCTTGTATGA236GACGAGGGTGTCCACTTTGTGAATCTTGGTATCAAAACCGTGTAGCTTAA
RS3GW95JQB RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
FD953189.1:218-237
TTCTTCATCCCATTCATCGTTCTTGTATGA218GACGAGGGTGTCCACTTTGTGAATCTTGGTATCAAAACCGTGTAGCTTAA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_21828.
FX666984.1:158-177
TTCTTCATCCCATTCATCGTTCTTGTATGA158GACGAGGGTGTCCACTTTGTGAATCTTGGTATCAAAACCGTGTAGCTTAA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_39003.
FX755938.1:71-90
TTCTTCATCCCATTCATCGTTCTTGTATGA71GACGAGGGTGTCCACTTTGTGAATCTTGGTATCAAAACCGTGTAGCTTAA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_4233.
FX785046.1:171-190
TTCTTCATCCCATTCGTCGTTCTTGTATGA171GACGAGGGTGTCCACTTTGTGAATCTTGGTATCAAAAGCGTGTAGCTTAA
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:42966511-42966530
TTCTTCATCCCATTCGTCGTTCTTGTATGA42966511GACGAGGGTGTCCACTTTGTGAATCTGCAAAGAAGCAGATTAAAAAACCA
Raphanus sativus genome assembly, chromosome: 3.
LR778312.1:40656662-40656681
TTCTTCATCCCATTCATCGTTCTTGTATGA40656662GACGAGGGTGTCCACTTTGTGAATCTGCAAAGAATTAAAAACCATTGCGG
Raphanus sativus genome assembly, chromosome: 9.
OY743206.1:40656662-40656681
TTCTTCATCCCATTCATCGTTCTTGTATGA40656662GACGAGGGTGTCCACTTTGTGAATCTGCAAAGAATTAAAAACCATTGCGG
Sequence 2727 from patent US 10858665.
MX131079.1:708-727
TTAAGCTACACGCTTTTGATACCAAGATTC708ACAAAGTGGACACCCTCGTCTCATACAAGAACGACGAATGGGATGAAGAA
Sequence 2728 from patent US 10858665.
MX131080.1:724-743
TTAAGCTACACGCTTTTGATACCAAGATTC724ACAAAGTGGACACCCTCGTCTCATACAAGAACGACGAATGGGATGAAGAA
Sequence 2729 from patent US 10858665.
MX131081.1:651-670
TTAAGCTACACGCTTTTGATACCAAGATTC651ACAAAGTGGACACCCTCGTCTCATACAAGAACGACGAATGGGATGAAGAA
Sequence 2763 from patent US 10858665.
MX131115.1:685-704
TTAAGCTACACGGTTTTGATACCAAGATTC685ACAAAGTGGACACCCTCGTCTCATACAAGAACGATGAATGGGATGAAGAA
Sequence 2764 from patent US 10858665.
MX131116.1:689-708
TTAAGCTACACGGTTTTGATACCAAGATTC689ACAAAGTGGACACCCTCGTCTCATACAAGAACGATGAATGGGATGAAGAA
Sequence 2727 from patent US 11485982.
OO833464.1:708-727
TTAAGCTACACGCTTTTGATACCAAGATTC708ACAAAGTGGACACCCTCGTCTCATACAAGAACGACGAATGGGATGAAGAA
Sequence 2728 from patent US 11485982.
OO833465.1:724-743
TTAAGCTACACGCTTTTGATACCAAGATTC724ACAAAGTGGACACCCTCGTCTCATACAAGAACGACGAATGGGATGAAGAA
Sequence 2729 from patent US 11485982.
OO833466.1:651-670
TTAAGCTACACGCTTTTGATACCAAGATTC651ACAAAGTGGACACCCTCGTCTCATACAAGAACGACGAATGGGATGAAGAA
Sequence 2763 from patent US 11485982.
OO833500.1:685-704
TTAAGCTACACGGTTTTGATACCAAGATTC685ACAAAGTGGACACCCTCGTCTCATACAAGAACGATGAATGGGATGAAGAA
Sequence 2764 from patent US 11485982.
OO833501.1:689-708
TTAAGCTACACGGTTTTGATACCAAGATTC689ACAAAGTGGACACCCTCGTCTCATACAAGAACGATGAATGGGATGAAGAA
Sequence 2727 from patent US 11512323.
OO917166.1:708-727
TTAAGCTACACGCTTTTGATACCAAGATTC708ACAAAGTGGACACCCTCGTCTCATACAAGAACGACGAATGGGATGAAGAA
Sequence 2728 from patent US 11512323.
OO917167.1:724-743
TTAAGCTACACGCTTTTGATACCAAGATTC724ACAAAGTGGACACCCTCGTCTCATACAAGAACGACGAATGGGATGAAGAA
Sequence 2729 from patent US 11512323.
OO917168.1:651-670
TTAAGCTACACGCTTTTGATACCAAGATTC651ACAAAGTGGACACCCTCGTCTCATACAAGAACGACGAATGGGATGAAGAA
Sequence 2763 from patent US 11512323.
OO917202.1:685-704
TTAAGCTACACGGTTTTGATACCAAGATTC685ACAAAGTGGACACCCTCGTCTCATACAAGAACGATGAATGGGATGAAGAA
Sequence 2764 from patent US 11512323.
OO917203.1:689-708
TTAAGCTACACGGTTTTGATACCAAGATTC689ACAAAGTGGACACCCTCGTCTCATACAAGAACGATGAATGGGATGAAGAA
BNSCS3CT_UP_008_D12_08JAN2005_090 Brassica napus seed coat BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EE465570.1:595-614
TTAAGCTACACGCTTTTGATACCAAGATTC595ACAAAGTGGACACCCTCGTCTCATACAAGAACGACGAATGGGATGAAGAA
BNSCS3CT_UP_036_E09_12JAN2005_071 Brassica napus seed coat BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EE467737.1:668-687
TTAAGCTACACGCTTTTGATACCAAGATTC668ACAAAGTGGACACCCTCGTCTCATA
37RDBRH_UP_064_B11_05DEC2005_093 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence.
EE526941.1:260-279
TTAAGCTACACGCTTTTGATACCAAGATTC260ACAAAGTGGACACCCTCGTCTCATACAAGAACGACGAATGGGATGAAGAA
BNQA_UP_054_A10_03OCT2003_080 Brassica napus BNQA Brassica napus cDNA 5', mRNA sequence.
EE551500.1:179-198
TTAAGCTACACGCTTTTGATACCAAGATTC179ACAAAGTGGACACCCTCGTCTCATACAAGAACGACGAATGGGATGAAGAA
65JKBNM0_T3_005_A11_16MAR2005_095 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL587053.1:629-648
TTAAGCTACACGCTTTTGATACCAAGATTC629ACAAAGTGGACACCCTCGTCTCATACAAGAACGACGAATGGGATGAAGAA
RR3B136TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV550957.1:684-703
TTAAGCTACACGGTTTTGATACCAAGATTC684ACAAAGTGGACACCCTCGTCTCATACAAGAGCGATGAATGGGATGAAGAA
RS3A107TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EW731123.1:688-707
TTAAGCTACACGGTTTTGATACCAAGATTC688ACAAAGTGGACACCCTCGTCTCATACAAGAACGATGAATGGGATGAAGAA
RS3AR74TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EW733548.1:685-704
TTAAGCTACACGTTTTTGATACCAAGATTC685ACAAAGTGGACACCCTCGTCTCATACAAGAACGATGAATGGGATGAAGAA
BR073547 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-026C06 5', mRNA sequence.
EX087257.1:735-754
TTAAGCTACACGCTTTTGATACCAAGATTC735ACAAAGTGGACACCCTCGTCTCATACAAGAACGACGAATGGGATGAAGAA
RR3CM88TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EX765094.1:680-699
TTAAGCTACACGGTTTTGATACCAAGATTC680ACAAAGTGGACACCCTCGTCTCATACAAGAACGATGAATGGGATGAAGAG
RR1EE20TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EY901164.1:675-694
TTAAGCTACACGGTTTTGATACCAAGATTC675ACAAAGTGGACACCCTCGTCTCATACAGAACGATGAATGGGATGAAGAGA
RR1FV64TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
FD536558.1:569-588
TTAAGCTACACGGTTTTGATACCAAGATTC569ACAAAGTGGACACCCTCGTCTCATACAAGAACGATGAATGGGATGAAGAA
RR3EG33TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD548176.1:454-473
TTAAGCTACACGGTTTTGATACCAAGATTC454ACAAAGTGGACACCCTCGTCTCATACAAGAACGATGAATGGGATGAAGAA
RS2FI04TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD570730.1:688-707
TTAAGCTACACGGTTTTGATACCAAGATTC688ACAAAGTGGACACCCTCGTCTCATACAAGAACGATGAATGGGATGAAGAA
RS2G080TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD572312.1:405-424
TTAAGCCACACGGTTTTGATACCAAGATTC405ACAAAGTGGACACCCTCGTCTCATACAAGAACGATGAATGGGATGAAGAA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_25270.
FX724570.1:135-154
TTAAGCTACACGCTTTTGATACCAAGATTC135ACAAAGTGGACACCCTCGTCTCATACAAGAACGACGAATGGGATGAAGAA
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:16760846-16760865
TTGGTTTTTGTTCTGCTTCTTTGCAGATTC16760846ACAAAGTGGACACCCTCGTCTCATACAAGAACGACGAATGGGATGAAGAA
Brassica napus genome assembly, chromosome: C09.
HG994373.1:25878383-25878402
TGGTTTTTTAATCTGCTTCTTTGCAGATTC25878383ACAAAGTGGACACCCTCGTCTCATACAAGAACGACGAATGGGATGAAGAA
Brassica rapa genome, scaffold: A09.
LR031568.1:16418142-16418161
TTGGTTTTTGTTCTGCTTCTTTGCAGATTC16418142ACAAAGTGGACACCCTCGTCTCATACAAGAACGACGAATGGGATGAAGAA
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:25760930-25760949
TGGTTTTTTAATCTGCTTCTTTGCAGATTC25760930ACAAAGTGGACACCCTCGTCTCATACAAGAACGACGAATGGGATGAAGAA
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:16744882-16744901
TTGGTTTTTGTTCTGCTTCTTTGCAGATTC16744882ACAAAGTGGACACCCTCGTCTCATACAAGAACGACGAATGGGATGAAGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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