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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 14:40:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CSAD-PNP1242A13 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone CSAD-PNP1242A13 5', mRNA sequence.
DR405300.1:14-35
GGGGAAACTCAAA14CCTTATCTTCATCACCTCCGTCTTTCTCTCTCTCTCTCTCGCTCTCTCAAGA
IC0AAA34CG01RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY273697.1:7-28
CTCAAA7CCTTATCTTCATCACCTCCGTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTC
CS00-C1-102-006-F07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY665875.1:42-63
CCTTCCATTTTTAGTTCCTTAAAACTCAAA42CCTTATCTTCATCACCTCCGTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTC
CS00-C1-102-024-D02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
EY666793.1:44-65
CTTCCATTTTTAGTTTCTTACAAACTCAAA44CCTTATCTTCATCACCTCCGTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTC
CS00-C3-704-052-H07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
EY733317.1:41-62
GTTCCATTTTTAGTTTCTTACAAACTCAAA41CCTTATCTTCATCACCTCCGTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTC
IC0AAA34CG01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA34CG01, mRNA sequence.
FC903062.1:7-28
CTCAAA7CCTTATCTTCATCACCTCCGTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTC
C34206A03EF PostHarveN Citrus clementina cDNA clone C34206A03, mRNA sequence.
FC932227.1:31-52
GTTCCATTTTTAGTTTCTTACAAACTCAAA31CCTTATCTTCATCACCTCCGTCTCTCTCTCTCTCTCTCGCTCTCTCAAGAGA
Citrus sinensis genome assembly, chromosome: 3.
OY754320.1:11979840-11979861
CTTCCATTTTTAGTTTCTTACAAACTCAAA11979840CCTTATCTTCATCACCTCCGTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GACGGAGGTGATGAAGATAAGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GACGGAGGTGATGAAGATAAGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.104 | 0.095 | search_plus_done; http://172.18.8.135:50400/match?q=GACGGAGGTGATGAAGATAAGG&k=0&no_gap=0&offset=0&limit=50
0.564 | 0.459 | search_minus_done; http://172.18.8.135:50400/match?q=CCTTATCTTCATCACCTCCGTC&k=0&no_gap=0&offset=0&limit=50
0.570 | 0.006 | cgi_end;

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