GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 02:14:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Eilema caniola genome assembly, chromosome: 10.
OX421471.1:8572287-8572306
TTAACATACAGCCCATGATAGTATCCGCTT8572287GACGGTGATAGGCACCTCTTTTGGGACTCAACATGGGACCGAAAATCATA
CGN-26660 Leaf Coffea canephora cDNA clone cccl1f23 5', mRNA sequence.
DV685362.1:575-594
TTGATCATCATCGTCATCATCATAATCATC575AAGAGGTGCCTATCACCGTCCTCCAATCATCATCATCATCATCATCATCA
CGN-26757 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w17c4 5', mRNA sequence.
DV685439.1:143-162
TTGATCATCATCGTCATCATCATAATCATC143AAGAGGTGCCTATCACCGTCCTCCAATCATCATCATCATCACCATCATCA
CGN-29884 Leaf Coffea canephora cDNA clone cccl4c6 5', mRNA sequence.
DV687771.1:315-334
TTGATCATCATCGTCATCATCATAATCATC315AAGAGGTGCCTATCACCGTCCTCCAATCATCATCATCATCATCATCATCA
CGN-30525 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w17c4 5', mRNA sequence.
DV688113.1:150-169
TTGATCATCATCGTCATCATCATAATCATC150AAGAGGTGCCTATCACCGTCCTCCAATCATCATCATCATCACCATCATCA
CGN-32862 Leaf Coffea canephora cDNA clone cccl18e1 5', mRNA sequence.
DV689714.1:213-232
TTGATCATCATCGTCATCATCATAATCATG213AAGAGGTGCCTATCACCGTCCTCCAATCATCTTTTTCATCATCATCATCA
CGN-33298 Leaf Coffea canephora cDNA clone cccl18e14 5', mRNA sequence.
DV690042.1:447-466
TTGATCATCATCGTCATCATCATAATCATC447AAGAGGTGCCTATCACCGTCCTCCAATCATCATCATCATCATCATCATCA
CGN-36069 Leaf Coffea canephora cDNA clone cccl26c2 5', mRNA sequence.
DV692210.1:588-607
TTGATCATCATCGTCATCATCATAATCATC588AAGAGGTGCCTATCACCGTCCTCCAATCATCATCATCATCATCATCATCA
CGN-36273 Leaf Coffea canephora cDNA clone cccl16o1 5', mRNA sequence.
DV692367.1:246-265
TTGATCATCATCGTCATCATCATAATCATC246AAGAGGTGCCTATCACCGTCCTCCAATCATCATCATCATCATCATCATCA
CGN-61887 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w30n16 5', mRNA sequence.
DV712755.1:587-606
TTGATCATCATCGTCATCATCATAATCATC587AAGAGGTGCCTATCACCGTCCTCCAATCATCATCATCATCACCATCATCA
CC00-XX-SH3-039-A11-EM.F Coffea canephora SH3 Coffea canephora cDNA clone CC00-XX-SH3-039-A11-EM, mRNA sequence.
GT647314.1:280-299
TTGATCATCATCGTCATCATCATAATCATC280AAGAGGTGCCTATCACCGTCCTCCAATCATCATCATCATCATCATCATCA
CA00-XX-SH2-061-B08-EM.F Coffea arabica SH2 Coffea arabica cDNA clone CA00-XX-SH2-061-B08-EM, mRNA sequence.
GW440861.1:553-572
TTGATCATCATCGTCATCATCATAATCATC553AAGAGGTGCCTATCACCGTCCTCCAATCATCATCATCATCACCATCATCA
CA00-XX-SH2-024-H12-EM.F Coffea arabica SH2 Coffea arabica cDNA clone CA00-XX-SH2-024-H12-EM, mRNA sequence.
GW441504.1:221-240
TTGATCATCATCGTCATCATCATGATCATC221AAGAGGTGCCTATCACCGTCGTCCAATCATCATCATCATCATCACCATCA
CA00-XX-SH2-011-E03-EM.F Coffea arabica SH2 Coffea arabica cDNA clone CA00-XX-SH2-011-E03-EM, mRNA sequence.
GW447711.1:69-88
TTGATCATCATCGTCATCATCATGATCATC69AAGAGGTGCCTATCACCGTCGTCCAATCATCATCATCATCATCACCATCA
CCES34 Coffee EST-SSR sequence Coffea canephora STS cDNA, sequence tagged site.
GF110685.1:583-602
TTGATCATCATCGTCATCATCATAATCATC583AAGAGGTGCCTATCACCGTCCTCCAATCATCATCATCATCATCATCATCA
CCES35 Coffee EST-SSR sequence Coffea canephora STS cDNA, sequence tagged site.
GF110686.1:583-602
TTGATCATCATCGTCATCATCATAATCATC583AAGAGGTGCCTATCACCGTCCTCCAATCATCATCATCATCATCATCATCA
Coffea arabica microsatellite DNA, clone 113-5CTG.
AJ308814.1:29-48
GATCATCATCGTCATCATCATAATCATC29AAGAGGTGCCTATCACCGTCCTCCAATCATCATCATCATCACCATCATCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GACGGTGATAGGCACCTCTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GACGGTGATAGGCACCTCTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.092 | 0.084 | search_plus_done; http://172.18.8.135:50400/match?q=GACGGTGATAGGCACCTCTT&k=0&no_gap=0&offset=0&limit=50
1.188 | 1.095 | search_minus_done; http://172.18.8.135:50400/match?q=AAGAGGTGCCTATCACCGTC&k=0&no_gap=0&offset=0&limit=49
1.198 | 0.010 | cgi_end;

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