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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:53:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Pyrus x bretschneideri Unigene10006_XinShao mRNA sequence.
JR605066.1:262-281
CGGAATTGGGCCGGAAATGAGATTATCGGC262GACGTTGAGGACCGTGAGACGGTGGAGCCGGCCGATTCCGGACGGAATCT
Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:38627818-38627837
CGGAATTGGGCCGGAAATGAGATTATCGGC38627818GACGTTGAGGACCGTGAGACGGTGGAGCCGGCCGATTCCGGACGGAATCT
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:25739510-25739529
CGGAATTGGGCCGGAAATGAGATTATCGGC25739510GACGTTGAGGACCGTGAGACGGTGGAGCCGGCCGATTCCGGACGGAATCT
Mdfw2008k09.y1 Mdfw Malus domestica cDNA clone Mdfw2008k09 5' similar to SW:D100_ARATH Q00874 DNA-DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 PRECURSOR, mRNA sequence.
CN490848.1:588-607
AGATTCCGTCAGGAAACGGCCGGCTCCACC588GTCTCACGGTCCTCAACGTC
Mdfr3011i10.y2 Mdfr Malus domestica cDNA clone Mdfr3011i10 5' similar to TR:Q42078 Q42078 PROTEIN KINASE RECEPTOR-LIKE, mRNA sequence.
CO416976.1:19-38
GAATCGGCCGGCTCCACC19GTCTCACGGTCCTCAACGTCGCCGATAATCTCATTTCTGGCCCAATTCCG
010417AASA003101HT (AASA) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASA003101, mRNA sequence.
EB124901.1:480-499
AGATTCCGTCAGGAATCGGCCGGCTCCACC480GTCTCACGGTCCTCAACGTCGCCGATAATCTCATTTCTGGCCCAATTCCG
030115ABQA999078HT (ABQA) Royal Gala flower Malus domestica cDNA clone ABQA999078, mRNA sequence.
EB156936.1:329-348
AGATTCCGTCAGGAATCGGCCGGCTCCACC329GTCTCACGGTCCTCAACGTCGCCGATAATCTCATTTCTGGCCCAATTCCG
030213ABQA001273HT (ABQA) Royal Gala flower Malus domestica cDNA clone ABQA001273, mRNA sequence.
EB157182.1:329-348
AGATTCCGTCAGGAATCGGCCGGCTCCACC329GTCTCACGGTCCTCAACGTCGCCGATAATCTCATTTCTGGCCCAATTCCG
030213ABQA001412HT (ABQA) Royal Gala flower Malus domestica cDNA clone ABQA001412, mRNA sequence.
EB157228.1:604-623
AGATTCCGTCAGGAATCGGCCGGCTCCACC604GTCTCACGGTCCTCAACGTCGCCGATAATCTCATTTC
030213ABQA001447HT (ABQA) Royal Gala flower Malus domestica cDNA clone ABQA001447, mRNA sequence.
EB157245.1:331-350
AGATTCCGTCAGGAATCGGCCGGCTCCACC331GTCTCACGGTCCTCAACGTCGCCGATAATCTCATTTCTGGCCCAATTCCG
030213ABQA001522HT (ABQA) Royal Gala flower Malus domestica cDNA clone ABQA001522, mRNA sequence.
EB157268.1:592-611
AGATTCCGTCAGGAATCGGCCGGCTCCACC592GTCTCACGGTCCTCAACGTCGCCGATAATCTCATTTCT
Mdfwg2101K14.g1 Apple_EST_Mdfwg Malus domestica cDNA 5' similar to ref|NP_188718.1| disease resistance protein family (LRR) [Arabidopsis thaliana] dbj|BAB02490.1| polygalacturonase inhibitor-like prot
GO502759.1:511-530
AGATTCCGTCAGGAATCGGCCGGCTCCACC511GTCTCACGGTCCTCAACGTCGCCGATAATCTCATTTCTGGCCCAATTCCG
Mdfwg2100B18.g1 Apple_EST_Mdfwg Malus domestica cDNA 5' similar to ref|NP_188718.1| disease resistance protein family (LRR) [Arabidopsis thaliana] dbj|BAB02490.1| polygalacturonase inhibitor-like prot
GO503323.1:619-638
AGATTCCGTCAGGAATCGGCCGGCTCCACC619GTCTCACGGTCCTCAACGTCGCCGATAATCTCATTTCTGGCCCGATTCCG
Mdfwg2102D10.g1 Apple_EST_Mdfwg Malus domestica cDNA 5' similar to emb|CAD56505.1| polygalacturonase inhibitor-like protein [Cicer arietinum], mRNA sequence.
GO503837.1:119-138
AGATTCCGTCAGGAATCGGCCGGCTCCACC119GTCTCACGGTCCTCAACGTCGCCGATAATCTCATTTCTGGCCCAATTCCG
Mdfwg2106P05.g1 Apple_EST_Mdfwg Malus domestica cDNA 5' similar to ref|NP_188718.1| disease resistance protein family (LRR) [Arabidopsis thaliana] dbj|BAB02490.1| polygalacturonase inhibitor-like prot
GO505420.1:552-571
AGATTCCGTCAGGAATCGGCCGGCTCCACC552GTCTCACGGTCCTCAACGTCGCCGATAATCTCATTTCTGGCCCGATTCCG
Mdfwj2075C05.g1 Apple_EST_Mdfwj Malus domestica cDNA 5' similar to ref|NP_188718.1| disease resistance protein family (LRR) [Arabidopsis thaliana] dbj|BAB02490.1| polygalacturonase inhibitor-like prot
GO505470.1:615-634
AGATTCCGTCAGGAATCGGCCGGCTCCACC615GTCTCACGGTCCTCAACGTCGCCGATAATCTCATTTCTGGGCCAAATTCC
Mdfwb2098E06.g2 Apple_EST_Mdfwb Malus domestica cDNA 5' similar to emb|CAD56505.1| polygalacturonase inhibitor-like protein [Cicer arietinum], mRNA sequence.
GO508440.1:222-241
AGATTCCGTCAGGAATCGGCCGGCTCCACC222GTCTCACGGTCCTCAACGTCGCCGATAATCTCATTTCTGGCCCAATTCCG
Mdfws2074L14.g1 Apple_EST_Mdfws Malus domestica cDNA 5' similar to ref|NP_188718.1| disease resistance protein family (LRR) [Arabidopsis thaliana] dbj|BAB02490.1| polygalacturonase inhibitor-like prot
GO511590.1:561-580
AGATTCCGTCAGGAATCGGCCGGCTCCACC561GTCTCACGGTCCTCAACGTCGCCGATAATCTCATTTCTGGCCCAATTCCG
Mdfwf2087I10.g1 Apple_EST_Mdfwf Malus domestica cDNA 5' similar to ref|NP_188718.1| disease resistance protein family (LRR) [Arabidopsis thaliana] dbj|BAB02490.1| polygalacturonase inhibitor-like prot
GO513062.1:525-544
AGATTCCGTCAGGAATCGGCCGGCTCCACC525GTCTCACGGTCCTCAACGTCGCCGATAATCTCATTTCTGGCCCAATTCCG
Mdfwj2080M21.g1 Apple_EST_Mdfwj Malus domestica cDNA 5' similar to ref|NP_188718.1| disease resistance protein family (LRR) [Arabidopsis thaliana] dbj|BAB02490.1| polygalacturonase inhibitor-like prot
GO543108.1:561-580
AGATTCCGTCAGGAATCGGCCGGCTCCACC561GTCTCACGGTCCTCAACGTCGCCGATAATCTCATTTCTGGCCCAATTCCG
Mdfwj2081B14.g1 Apple_EST_Mdfwj Malus domestica cDNA 5' similar to ref|NP_188718.1| disease resistance protein family (LRR) [Arabidopsis thaliana] dbj|BAB02490.1| polygalacturonase inhibitor-like prot
GO543813.1:592-611
AGATTCCGTCAGGAATCGGCCGGCTCCACC592GTCTCACGGTCCTCAACGTCGCCGATAATCTCATTTCTGGCCCAATTCCG
Pyrus pyrifolia mRNA, clone: NFR6_30_30, 5' end sequence, expressed in fruit.
HX761115.1:231-250
AGATTCCGTCCGGAATCGGCCGGCTCCACC231GTCTCACGGTCCTCAACGTCGCCGATAATCTCATTTCCGGCCCAATTCCG
TSA: Pyrus pyrifolia mRNA, contig: contig_7989.
FX394792.1:231-250
AGATTCCGTCCGGAATCGGCCGGCTCCACC231GTCTCACGGTCCTCAACGTCGCCGATAATCTCATTTCCGGCCCAATTCCG
TSA: Pyrus communis mRNA, contig: lc528.
FX609115.1:51-70
AGATTCCGTCCGGAATCGGCCGGCTCCACC51GTCTCACGGTCCTCAACGTCGCCGATAATCTCATTTCCGGCCCAATTCCG
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2331760-2331779
AGATTCCGTCAGGAATCGGCCGGCTCCACC2331760GTCTCACGGTCCTCAACGTCGCCGATAATCTCATTTCTGGCCCAATTCCG
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2289795-2289814
AGATTCCGTCAGGAATCGGCCGGCTCCACC2289795GTCTCACGGTCCTCAACGTCGCCGATAATCTCATTTCTGGCCCGATTCCG
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:2368349-2368368
AGATTCCGTCCGCAATCGGCCGGCTCCACC2368349GTCTCACGGTCCTCAACGTCGCCGATAATCTCATTTCTGGCCCAATTCCG
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2462915-2462934
AGATTCCGTCAGGAATCGGCCGGCTCCACC2462915GTCTCACGGTCCTCAACGTCGCCGATAATCTCATTTCTGGCCCAATTCCG
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2511517-2511536
AGATTCCGTCAGGAATCGGCCGGCTCCACC2511517GTCTCACGGTCCTCAACGTCGCCGATAATCTCATTTCTGGCCCAATTCCG
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2511061-2511080
AGATTCCGTCAGGAATCGGCCGGCTCCACC2511061GTCTCACGGTCCTCAACGTCGCCGATAATCTCATTTCTGGCCCAATTCCG
Cellulomonas fimi ATCC 484, complete genome.
CP002666.1:1202130-1202149
TCACCAAGGGCCTGCTCGGCGCGGTCCTCG1202130GTCTCACGGTCCTCAACGTCGGCATCGCGGTGCTCTGGCGCTGAGCCCGG
Cellulomonas fimi strain NCTC7547 genome assembly, chromosome: 1.
LR134387.1:1202134-1202153
TCACCAAGGGCCTGCTCGGCGCGGTCCTCG1202134GTCTCACGGTCCTCAACGTCGGCATCGCGGTGCTCTGGCGCTGAGCCCGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GACGTTGAGGACCGTGAGAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GACGTTGAGGACCGTGAGAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.208 | 0.199 | search_plus_done; http://172.18.8.135:50400/match?q=GACGTTGAGGACCGTGAGAC&k=0&no_gap=0&offset=0&limit=50
2.464 | 2.256 | search_minus_done; http://172.18.8.135:50400/match?q=GTCTCACGGTCCTCAACGTC&k=0&no_gap=0&offset=0&limit=47
2.483 | 0.019 | cgi_end;

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