GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-08 04:53:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Phocoena phocoena genome assembly, chromosome: 15.
OZ004772.1:85653535-85653554
TTCCAGAATGATTCTCTGTGGGCCGTGTTT85653535GTGAATGTTGAACCTGAGTCTTTGAGTCAGGGCTGTCTCTGAATGAACCC
Lotus japonicus genomic DNA, chromosome 2, clone: LjT04O04, TM1589.
AP008168.2:11778-11797
CTCTCTCTCTCTCTCTCTCTCTCTCTCCGC11778GTGAATGTTGAACCTGAGTCTTTTCTTCCTTCTCTGTGTTATTTTCTTCT
Lotus japonicus genomic DNA, chromosome 2, clone: LjT33E11, TM0310b.
AP006422.1:5010-5029
CTCTCTCTCTCTCTCTCTCTCTCTCTCCGC5010GTGAATGTTGAACCTGAGTCTTTTCTTCCTTCTCTGTGTTATTTTCTTCT
Lotus japonicus B-129 DNA, chromosome 2, complete sequence.
AP022630.1:65707705-65707724
CTCTCTCTCTCTCTCTCTCTCTCTCTCCGC65707705GTGAATGTTGAACCTGAGTCTTTTCTTCCTTCTCTGTGTTATTTTCTTCT
Umbilicus rupestris genome assembly, chromosome: 6.
OY787610.1:14638797-14638816
TCCTGATGAGTTTGAAACCTTAAAATGATA14638797GTGAATGTTGAACCTGAGTCCCAATTTCACCTACCAAAAATGAGGAAATC
Rahnella sikkimica strain ERMR1:05 plasmid unnamed2, complete sequence.
CP019064.1:160252-160271
TGGTTAGGTTGATTGTTTAGAATTAACTTA160252GTGAATGTTGAACCTGAGTCAATATATTGGACTCCACATAAACAATCATC
Neorotalia calcar LSU rRNA gene, isolate 262.
AJ228549.2:369-388
ATACACACACCATGCGTCGATACGTAATTC369GTGAATGTTGAACCTGAGTCGAGTTGTTT
Neorotalia calcar LSU rRNA gene, isolate 262.
AJ228550.2:373-392
AGACACACACCACGCGTCGATACGTAATTC373GTGAATGTTGAACCTGAGTCGAGTTGTTT
Pararotalia nipponica LSU rRNA gene, clone 11.
AJ240136.2:389-408
TGCGTTTCATAACCAAACGATACGTAATTC389GTGAATGTTGAACCTGAGTCGAGTTGTTT
Pararotalia sp. voucher NL_1.3 large subunit ribosomal RNA gene, partial sequence.
MG971222.1:410-429
ATTACACGCATTAAAATGTTAACGTAATTC410GTGAATGTTGAACCTGAGTCGAGTTGTTTGGGACTACAGCTCAAATAGTT
T.sp. gene for 28S ribosomal RNA.
Z30147.1:505-524
TATTACAGTTATAAATTATAAACGTAATTC505GTGAATGTTGAACCTGAGTCGAGTTGTTTGGGACTACAGCTCAAATAGAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GACTCAGGTTCAACATTCAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GACTCAGGTTCAACATTCAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.124 | 0.115 | search_plus_done; http://172.18.8.135:50400/match?q=GACTCAGGTTCAACATTCAC&k=0&no_gap=0&offset=0&limit=50
0.160 | 0.036 | search_minus_done; http://172.18.8.135:50400/match?q=GTGAATGTTGAACCTGAGTC&k=0&no_gap=0&offset=0&limit=50
0.168 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).