GGGenome | Results

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2025-04-06 00:56:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

EST1075431 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT564791.1:207-226

CAACCCCAGCAACGCCAAGATGATTCGGAC207GACTCCCACCCTAACAACAGCGCTATCTCTGACTTTGACAGTGCCCAATT

UFL_082_61 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES841942.1:253-272

CAACCCCAGCAACGCCAAGATGATTCGGAC253GACTCCCACCCTAACAACAGCGCTATCTCTGACTTTGACAGTGCCCAATT

Gossypium raimondii isolate D5-4 chromosome D5_01.
CP032553.1:51331295-51331314

CAACCACAGCAACGCCAAGATGATTCGGAC51331295GACTCCCACCCTAACAACAGCGCTATCTCTGACTTTGACAGTGCCCAATT

Gossypium rotundifolium isolate GPK201 chromosome 1.
CP106722.1:12228500-12228519

AATTGGGCACTGTCAAAGTCAGAGATAGCG12228500CTGTTGTTAGGGTGGGAGTCGTCCGAATCACCTTGGCGTTGCTGGGGTTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.219 | 0.210 | search_plus_done; http://172.18.8.135:50400/match?q=GACTCCCACCCTAACAACAG&k=0&no_gap=0&offset=0&limit=50
0.244 | 0.025 | search_minus_done; http://172.18.8.135:50400/match?q=CTGTTGTTAGGGTGGGAGTC&k=0&no_gap=0&offset=0&limit=47
0.245 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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