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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 19:27:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_15927.
FX700372.1:1105-1125
GCCACGACGGCTCTGCTTCCGGAACTCTCC1105GACTCGTCTGTGTTCTTCATCGGTGCCACTAAATCCACGACGGAGGATCGA
KBrB080J08F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB080J08, genomic survey sequence.
DX070982.1:493-513
GCCACGACGGCTCTGCTTCCGGAACTCTCC493GACTCGTCTGTGTTCTTCATCGGTGCCACTAAATCCACGACGGAGGATCGA
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:34139836-34139856
GCCACGACGGCTCTGCTTCCGGAACTCTCC34139836GACTCGTCTGTGTTCTTCATCGGTGCCACTAAATCCATGACGGAGGATCGA
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:54615578-54615598
GCCACGACGGCTCTGCTGCCGGAACTCTCC54615578GACTCGTCTGTGTTCTTCATCGGTACCAAATCCACGACGGAGGATCAGAAA
39RDBRT_UP_069_H09_30NOV2005_065 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
EE530003.1:104-124
TCGATCCTCCGTCGTGGATTTAGTGGCACC104GATGAAGAACACAGACGAGTCGGAGAGTTCCGGAAGCAGAGCCGTCGTGGC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_81081.
FX786462.1:90-110
TCGATCCTCCGTCGTGGATTTAGTGGCACC90GATGAAGAACACAGACGAGTCGGAGAGTTCCGGAAGCAGAGCCGTCGTGGC
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 882 unordered pieces.
FJ789639.1:2645727-2645747
TCGATCCTCCGTCGTGGATTTAGTGGCACC2645727GATGAAGAACACAGACGAGTCGGAGAGTTCCGGAAGCAGAGCCGTCGTGGC
Brassica napus genome assembly, chromosome: A07.
HG994361.1:2498936-2498956
TCGATCCTCCGTCATGGATTTAGTGGCACC2498936GATGAAGAACACAGACGAGTCGGAGAGTTCCGGAAGCAGAGCCGTCGTGGC
Brassica napus genome assembly, chromosome: C07.
HG994371.1:7085936-7085956
TTTCTGATCCTCCGTCGTGGATTTGGTACC7085936GATGAAGAACACAGACGAGTCGGAGAGTTCCGGCAGCAGAGCCGTCGTGGC
Brassica rapa genome, scaffold: A07.
LR031574.1:2509796-2509816
TCGATCCTCCGTCGTGGATTTAGTGGCACC2509796GATGAAGAACACAGACGAGTCGGAGAGTTCCGGAAGCAGAGCCGTCGTGGC
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:8390915-8390935
TTTCTGATCCTCCGTCGTGGATTTGGTACC8390915GATGAAGAACACAGACGAGTCGGAGAGTTCCGGCAGCAGAGCCATCGTGGC
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:2521600-2521620
TCGATCCTCCGTCGTGGATTTAGTGGCACC2521600GATGAAGAACACAGACGAGTCGGAGAGTTCCGGAAGCAGAGCCGTCGTGGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GACTCGTCTGTGTTCTTCATC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GACTCGTCTGTGTTCTTCATC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.281 | 0.273 | search_plus_done; http://172.18.8.135:50400/match?q=GACTCGTCTGTGTTCTTCATC&k=0&no_gap=0&offset=0&limit=50
0.468 | 0.186 | search_minus_done; http://172.18.8.135:50400/match?q=GATGAAGAACACAGACGAGTC&k=0&no_gap=0&offset=0&limit=46
0.473 | 0.005 | cgi_end;

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