GGGenome | Results

Help | Japanese

2025-04-06 11:41:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

RTCNT1_53_C11.b1_A029 Root control Pinus taeda cDNA clone RTCNT1_53_C11_A029 3', mRNA sequence.
CF670865.1:257-276

GAGGAAAGGACCTTCTCCTTTAGAAATAGT257GACTGTTAGATAAACATGGGGTTCAACAGAAGCGATATCACTGTCCCTAT

RTS1_2_H09.b1_A029 Roots minus sulfur Pinus taeda cDNA clone RTS1_2_H09_A029 3', mRNA sequence.
DR109493.1:163-182

GAGGAAAGGACCTTCTCCTTTAGAAATAGT163GACTGTTAGATAAACATGGGGTTCAACAGAAGCGATATCACTGTCCCTAT

RTS1_2_H10.b1_A029 Roots minus sulfur Pinus taeda cDNA clone RTS1_2_H10_A029 3', mRNA sequence.
DR109494.1:338-357

GAGGAAAGGACCTTCTCCTTTAGAAATAGT338GACTGTTAGATAAACATGGGGTTCAACAGAAGCGATATCACTGTCCCTAT

PBA0119.CR_A10 Pba01-Bark-wounded-Norm (PBA01) Pinus banksiana cDNA clone PBA0119_A10 3', mRNA sequence.
GW751042.1:663-682

GAGGAAAGGACCTTCTCCTTTAGAAATAGT663GACTGTTAGATAAACATGGGGTTCAACAGAAGCGATATCACTGTCCCTAT

Siphonodentalium dalli isolate Sc116.8C chromosome II.
CP136062.1:207022447-207022466

AATATATAATTAATATATTCAATTTGTGTT207022447GACTGTTAGATAAACATGGGTAGTAAGGGTGGTTGGAACAATTTTGTCAA

Siphonodentalium dalli isolate Sc116.8C chromosome VIII.
CP136068.1:133417834-133417853

TATTCGATTTTAGTGGGGTTATTTAGTGTT133417834GACTGTTAGATAAACATGGGTGATAAGGGTGGTTGAACAATTTTGCAAAT

RTWW3_4_A12.g1_A022 Well-watered loblolly pine roots WW3 Pinus taeda cDNA clone RTWW3_4_A12_A022 5', mRNA sequence.
CF476942.1:440-459

ATAGGGACAGTGATATCGCTTCTGTTGAAC440CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC

RTCNT1_16_B08.g1_A029 Root control Pinus taeda cDNA clone RTCNT1_16_B08_A029 5', mRNA sequence.
CF665520.1:419-438

ATGGGGACAGTGATATCGCTTCTGTTGAAC419CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC

HEAT1_52_B10.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone HEAT1_52_B10_A029 3', mRNA sequence.
DR014855.1:175-194

ATGGGGACAGTGATATCGCTTCTGTTGAAC175CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC

HEAT1_52_B10.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone HEAT1_52_B10_A029 5', mRNA sequence.
DR014937.1:456-475

ATGGGGACAGTGATATCGCTTCTGTTGAAC456CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC

STRR1_35_G05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_35_G05_A033 3', mRNA sequence.
DR097532.1:148-167

ATAGGGACAGTGATATCGCTTCTGTTGAAC148CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC

STRR1_35_G05.g4_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_35_G05_A033 5', mRNA sequence.
DR097603.1:389-408

ATAGGGACAGTGATATCGCTTCTGTTGAAC389CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC

STRR1_76_G01.b1_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_76_G01_A033 3', mRNA sequence.
DR101852.1:90-109

ATGGGGACAGTGATATCGCTTCTGTTGAAC90CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC

RTPHOS1_16_B05.g1_A029 Roots minus phosphorous Pinus taeda cDNA clone RTPHOS1_16_B05_A029 5', mRNA sequence.
DR167078.1:408-427

ATAGGGACAGTGATATCGCTTCTGTTGAAC408CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC

RTHG1_29_C11.b1_A029 Roots plus added mercury Pinus taeda cDNA clone RTHG1_29_C11_A029 3', mRNA sequence.
DR388572.1:148-167

ATAGGGACAGTGATATCGCTTCTGTTGAAC148CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC

EST1073961 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWAAM44 3' end, mRNA sequence.
DR683885.1:483-502

ATAGGGACAGTGATATCGCTTCTGTTGAAC483CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC

EST1074555 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWAAT15 3' end, mRNA sequence.
DR684478.1:484-503

ATAGGGACAGTGATATCGCTTCTGTTGAAC484CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC

EST1146713 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFC62 3' end, mRNA sequence.
DT631782.1:491-510

ATAGGGACAGTGATATCGCTTCTGTTGAAC491CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC

PCO011.C21_F04 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO011_F04 5', mRNA sequence.
GT241924.1:486-505

ATAGGGACAGTGATATCGCTTCTGTTGAAC486CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC

PCO011.CR_F04 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO011_F04 3', mRNA sequence.
GT242287.1:164-183

ATAGGGACAGTGATATCGCTTCTGTTGAAC164CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC

PCO018.C21_L16 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO018_L16 5', mRNA sequence.
GT251813.1:485-504

ATAGGGACAGTGATATCGCTTCTGTTGAAC485CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC

PCO018.CR_L16 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO018_L16 3', mRNA sequence.
GT252173.1:113-132

ATAGGGACAGTGATATCGCTTCTGTTGAAC113CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC

PBA0119.C21_A10 Pba01-Bark-wounded-Norm (PBA01) Pinus banksiana cDNA clone PBA0119_A10 5', mRNA sequence.
GW750672.1:545-564

ATAGGGACAGTGATATCGCTTCTGTTGAAC545CCCATGTTTATCTAACAGTCACTATTTCTAAAGGAGAAGGTCCTTTCCTC

Siphonodentalium dalli isolate Sc116.8C chromosome II.
CP136062.1:206164010-206164029

TTGACAAAATTGTTCCAACCACCCTTATTA206164010CCCATGTTTATCTAACAGTCAACACAATAACCCAACACAAATTGAATATA

Siphonodentalium dalli isolate Sc116.8C chromosome II.
CP136062.1:231226663-231226682

GTTGACAAAATTGTTCAAACATCCTTATCA231226663CCCATGTTTATCTAACAGTCAACACTAAATAAGCCAACACAAATCGAATA

Siphonodentalium dalli isolate Sc116.8C chromosome III.
CP136063.1:230643597-230643616

TGTGAAAAAATTGTTCAACCTACATTATCA230643597CCCATGTTTATCTAACAGTCAACATTAAATAAACCGACGCAAATCGAATA

Siphonodentalium dalli isolate Sc116.8C chromosome IV.
CP136064.1:211372790-211372809

GTTAACCAAATTGTTTACACACCCTTATCA211372790CCCATGTTTATCTAACAGTCAAAACTAAATAACCCAACTCAAATTGAATA

Siphonodentalium dalli isolate Sc116.8C chromosome VII.
CP136067.1:7655861-7655880

ACAAAATTTTTTGACCACCCTTTTCTATTA7655861CCCATGTTTATCTAACAGTCAACAATAAATAACCCAACACAAATCGAATA

Siphonodentalium dalli isolate Sc116.8C chromosome VII.
CP136067.1:7662552-7662571

ACAAAATTTTTTGACCACCCTTTTCTATTA7662552CCCATGTTTATCTAACAGTCAACAATAAATAACCCAACACAAATCGAATA

Siphonodentalium dalli isolate Sc116.8C chromosome VIII.
CP136068.1:108853426-108853445

ATTGACAAAATTGTTCAACTACCCTTATCA108853426CCCATGTTTATCTAACAGTCAACACTAAATAACTATATAATCCAACACAA

Siphonodentalium dalli isolate Sc116.8C chromosome VIII.
CP136068.1:135221116-135221135

CCGCCCTTATCACCCATGTTTATCTCACAA135221116CCCATGTTTATCTAACAGTCATTAATAACCCAACACATATTGAATATCAT

Hippopus hippopus genome assembly, chromosome: 3.
OX328098.1:1846338-1846357

TGGTAAAAAGAGAAATTGGTTGCCACAATC1846338CCCATGTTTATCTAACAGTCGTACGATGCTGTCCTAAAAGGTCAAATTCA

Tridacna derasa genome assembly, chromosome: 2.
OY723415.1:1853374-1853393

TGGTAAAAAGAGAAATTGGTTGCCACAATC1853374CCCATGTTTATCTAACAGTCGTACGATGCTGTCCTAAAAGGTCAAATTCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.301 | 0.292 | search_plus_done; http://172.18.8.135:50400/match?q=GACTGTTAGATAAACATGGG&k=0&no_gap=0&offset=0&limit=50
1.170 | 0.869 | search_minus_done; http://172.18.8.135:50400/match?q=CCCATGTTTATCTAACAGTC&k=0&no_gap=0&offset=0&limit=44
1.188 | 0.018 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).