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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 11:48:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Pyrus communis partial gene for putative nucleotide binding site leucine-rich repeat disease resistance protein, clone RGA15.
AJ581782.1:103-124
CTCATCATCTTTNAAGGCTTTCCGACTAAA103GAGAAAAAGAGCTTCATCTTGGGTTAATGGCCTAACCTCATATACCATCTCT
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:42637916-42637937
CTCATCATTTTTAAAGGCTTTCCGACTAAA42637916GAGAAAAAGAGCTTCATCTTGGGTTAATTGATTAACCTCATATACCATCTCT
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:42655269-42655290
CTCATCATTTTTAAAGGCTTTCCGACTAAA42655269GAGAAAAAGAGCTTCATCTTGGGTTAATTGATTAACCTCATATACCATCTCT
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:42672621-42672642
CTCATCATTTTTAAAGGCTTTCCGACTAAA42672621GAGAAAAAGAGCTTCATCTTGGGTTAATTGATTAACCTCATATACCATCTCT
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:42689972-42689993
CTCATCATTTTTAAAGGCTTTCCGACTAAA42689972GAGAAAAAGAGCTTCATCTTGGGTTAATTGATTAACCTCATATACCATCTCT
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:42773474-42773495
CTCATCATCTTTAAAGGCATTCCGACTAAA42773474GAGAAAAAGAGCTTCATCTTGGGTTAATGGCTTAACCTCATAGACCATCTCT
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:42827630-42827651
CTCATCATCTTTAAAGGCATTCTGACAAAA42827630GAGAAAAAGAGCTTCATCTTGGGTTAATGGCTTAACCTCATAGACCATCTCT
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141931.1:41968444-41968465
CTCATCATCTTTAAAGGCTTTCCGACTAAA41968444GAGAAAAAGAGCTTCATCTTGGGTTAATGGCTTAACCTCATATACCATCTCT
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:41551694-41551715
CTCATCATCTTTAAAGGCTTTCCGACTAAA41551694GAGAAAAAGAGCTTCATCTTGGGTTAATGGCTTAACCTCATATACCATCTCT
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:41572451-41572472
CTCATCATCTTTAAAGGCTTTCCGACTAAA41572451GAGAAAAAGAGCTTCATCTTGGGTTAATGGCTTAACCTCATATACCATATCT
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:41589869-41589890
CTCATCATCTTTAAAGGCATTCCGACAAAA41589869GAGAAAAAGAGCTTCATCTTGGGTTAATGGCTTAACCTCATAGACCATCTCT
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:42970419-42970440
CTCATCATCTTTAAAGGCTTTCCGACTAAA42970419GAGAAAAAGAGCTTCATCTTGGGTTAATGGCTTAACCTCATATACCATCTCT
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:42991176-42991197
CTCATCATCTTTAAAGGCTTTCCGACTAAA42991176GAGAAAAAGAGCTTCATCTTGGGTTAATGGCTTAACCTCATATACCATATCT
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:43008594-43008615
CTCATCATCTTTAAAGGCATTCCGACAAAA43008594GAGAAAAAGAGCTTCATCTTGGGTTAATGGCTTAACCTCATAGACCATCTCT
Malus hybrid cultivar cultivar SH6 chromosome 8.
CP143365.1:1529180-1529201
CTCATCATCTTTAAAGGCTTTCCGACTAAA1529180GAGAAAAAGAGCTTCATCTTGGGTTAATGGCTTAACCTCATATACCATCTCT
Malus hybrid cultivar cultivar SH6 chromosome 8.
CP143382.1:1439916-1439937
CTCATCATCTTTAAAGGCTTTCCGACTAAA1439916GAGAAAAAGAGCTTCATCTTGGGTTAATGGCTTAACCTCATATACCATCTCT
Malus hybrid cultivar cultivar SH6 chromosome 8.
CP143382.1:1452161-1452182
CTCATCATCTTTAAAGGCTTTCCGACTAAA1452161GAGAAAAAGAGCTTCATCTTGGGTTAATGGCTTAACCTCATATACCATCTCT
Malus sylvestris genome assembly, chromosome: 8.
OU696510.1:1532068-1532089
CTCATCATCTTTAAAGGCTTTCCGACTAAA1532068GAGAAAAAGAGCTTCATCTTGGGTTAATGGCTTAACCTCATATACCATCTCT
Malus sylvestris genome assembly, chromosome: 8.
OU696510.1:1547371-1547392
CTCATCATCTTTAAAGGCTTTCCGACTAAA1547371GAGAAAAAGAGCTTCATCTTGGGTTAATGGCTTAACCTCATATACCATATCT
Malus sylvestris genome assembly, chromosome: 8.
OU696510.1:1561499-1561520
CTCATCATCTTTAAAGGCTTTCCGACTAAA1561499GAGAAAAAGAGCTTCATCTTGGGTTAATGGCTTAACCTCATATACCATCTCT
Malus domestica genome assembly, chromosome: 8.
OU696684.1:1493265-1493286
CTCATCATCTTTAAAGGCTTTCCGACTAAA1493265GAGAAAAAGAGCTTCATCTTGGGTTAATGGCTTAACCTCATATACCATCTCT
Malus domestica genome assembly, chromosome: 5.
OU744546.1:3541372-3541393
CTCATCATCTTTAAGGGCTTTCCAACTAAA3541372GAGAAAAAGAGCTTCATCTTGGGTTAATGGCTTAACCTCATATACCATCTCT
Malus domestica genome assembly, chromosome: 8.
OU744549.1:1559442-1559463
CTCATCATCTTTAAAGGCTTTCCGACTAAA1559442GAGAAAAAGAGCTTCATCTTGGGTTAATGGCTTAACCTCATATACCATCTCT
Malus domestica genome assembly, chromosome: 8.
OU744960.1:1551151-1551172
CTCATCATCTTTAAAGGCTTTCCGACTAAA1551151GAGAAAAAGAGCTTCATCTTGGGTTAATGGCTTAACCTCATATACCATCTCT
Malus domestica genome assembly, chromosome: 8.
OU744998.1:1573452-1573473
CTCATCATCTTTAAAGGCTTTCCGACTAAA1573452GAGAAAAAGAGCTTCATCTTGGGTTAATGGCTTAACCTCATATACCATCTCT
Malus domestica genome assembly, chromosome: 8.
OU744998.1:1587408-1587429
CTCATCATCTTTAAAGGCTTTCCGACTAAA1587408GAGAAAAAGAGCTTCATCTTGGGTTAATGGCTTAACCTCATATACCATCTCT
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:41900319-41900340
CTCATCATCTTTAAAGGCATTCTGACAAAA41900319GAGAAAAAGAGCTTCATCTTGGGTTAATGGCTTAACCTCATAGACCATCTCT
Malus x robusta genome assembly, chromosome: 16.
OY720340.1:1512043-1512064
CTCATCATCTTTAAAGGCTTTCCGACTAAA1512043GAGAAAAAGAGCTTCATCTTGGGTTAATGGCTTAACCTTATATACCATCTCT
Malus x robusta genome assembly, chromosome: 16.
OY720340.1:1523332-1523353
CTCATCATCTTTAAAGGCTTTCCGACTAAA1523332GAGAAAAAGAGCTTCATCTTGGGTTAATGGCTTAACCTCATATACCATCTCT
Malus x robusta genome assembly, chromosome: 16.
OY720340.1:1544718-1544739
CTCATCATCTTTAAAGGCTTTCCGACTAAA1544718GAGAAAAAGAGCTTCATCTTGGGTTAATGGCTTAACCTCATATACCATCTCT
Malus x robusta genome assembly, chromosome: 16.
OY720340.1:1554553-1554574
CTCATCATCTTTAAAGGCTTTCCGACTAAA1554553GAGAAAAAGAGCTTCATCTTGGGTTAATGGCTTAACCTCATATACCATCTCT
Mdfw2007i04.y1 Mdfw Malus domestica cDNA clone Mdfw2007i04 5' similar to TR:Q9ZR77 Q9ZR77 DISEASE RESISTANCE PROTEIN HOMOLOG, mRNA sequence.
CN493687.1:205-226
AGAGATGGTATATGAGGTTAAGCCATTAAC205CCAAGATGAAGCTCTTTTTCTCTTTAGTCGGAAAGCCTTTAAAGATGATGAG
Mdst6023h05.y1 Mdst Malus domestica cDNA clone Mdst6023h05 5' similar to TR:Q9ZR77 Q9ZR77 DISEASE RESISTANCE PROTEIN HOMOLOG, mRNA sequence.
CV794299.1:124-145
AGAGATGGTCTATGAGGTTAAGCCATTAAC124CCAAGATGAAGCTCTTTTTCTCTTTTGTCGGAATGCCTTTAAAGATGATGAG
030121ABLC002329HT (ABLC) Braeburn cell culture three days after subculture Malus domestica cDNA clone ABLC002329, mRNA sequence.
EB155765.1:313-334
AGAGATGGTATATGAGGTTAAGCCTTTAAC313CCAAGATGAAGCTCTTTTTCTCTTTAGTCGGAAAGCCTTTAAAGATGATGAG
Malus x domestica NBS-LRR resistance gene-like protein ARGH12 gene, partial cds.
AY369214.1:390-411
AGAGATGGTCTATGAGGTTAAGCCATTAAC390CCAAGATGAAGCTCTTTTTCTCTTTTGTCGGAATGCCTTTAAAGATGATGAG
Malus hybrid cultivar cultivar Flame chromosome 8.
CP141917.1:28031930-28031951
AGAGATGGTATATGAGGTTAAGCCATTAAC28031930CCAAGATGAAGCTCTTTTTCTCTTTAGTCGGAAAGCCTTTAAAGATGATGAG
Malus hybrid cultivar cultivar Flame chromosome 8.
CP141917.1:28053275-28053296
AGAGATGGTATATGAGGTTAAGCCATTAAC28053275CCAAGATGAAGCTCTTTTTCTCTTTAGTCGGAAAGCCTTTAAAGATGATGAG
Malus hybrid cultivar cultivar Flame chromosome 8.
CP141917.1:28064564-28064585
AGAGATGGTATATAAGGTTAAGCCATTAAC28064564CCAAGATGAAGCTCTTTTTCTCTTTAGTCGGAAAGCCTTTAAAGATGATGAG
Malus hybrid cultivar cultivar Flame chromosome 8.
CP141934.1:29794692-29794713
AGAGATGGTATATGAGGTTAAGCCATTAAC29794692CCAAGATGAAGCTCTTTTTCTCTTTAGTCGGAAAGCCTTTAAAGATGATGAG
Malus hybrid cultivar cultivar Flame chromosome 8.
CP141934.1:29807415-29807436
AGAGATGGTATATGAGGTTAAGCCATTAAC29807415CCAAGATGAAGCTCTTTTTCTCTTTAGTCGGAAAGCCTTTAAAGATGATGAG
Malus hybrid cultivar cultivar Royalty chromosome 8.
CP141960.1:28260917-28260938
AGAGATGGTATATGAGGTTAAGCCATTAAC28260917CCAAGATGAAGCTCTTTTTCTCTTTAGTCGGAAAGCCTTTAAAGATGATGAG
Malus hybrid cultivar cultivar Royalty chromosome 8.
CP141960.1:28269260-28269281
AGAGATGGTATATGAGGTTAAGCCATTAAC28269260CCAAGATGAAGCTCTTTTTCTCTTTAGTCGGAAAGCCTTTAAAGATGATGAG
Malus hybrid cultivar cultivar Royalty chromosome 8.
CP141960.1:28332788-28332809
AGAGATGGTCTATGAGGTTAAGCCATTAAC28332788CCAAGATGAAGCTCTTTTTCTCTTTAGTCGGAAAGCCTTTAAAGATGATGAG
Malus hybrid cultivar cultivar Royalty chromosome 8.
CP141960.1:28349848-28349869
AGAGATGGTATATGAGGTTAAGCCATTAAC28349848CCAAGATGAAGCTCTTTTTCTCTTTAGTCGGAAAGCCTTTAAAGATGATGAG
Malus hybrid cultivar cultivar Royalty chromosome 8.
CP141960.1:28375704-28375725
AGAGATGGTAAATGAGGTTAAGCCATTAAC28375704CCAAGATGAAGCTCTTTTTCTCTTTAGTCGGAAAGCCTTTAAAGATGATGAG
Malus hybrid cultivar cultivar Royalty chromosome 8.
CP141977.1:28261192-28261213
AGAGATGGTATATGAGGTTAAGCCATTAAC28261192CCAAGATGAAGCTCTTTTTCTCTTTAGTCGGAAAGCCTTTAAAGATGATGAG
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:4484455-4484476
AGAGATGGTCTATGAGGTTAAGCCATTAAC4484455CCAAGATGAAGCTCTTTTTCTCTTTTGTCGGAATGCCTTTAAAGATGATGAG
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:4493133-4493154
AGATATGGTATATGAGGTTAAGCCATTAAC4493133CCAAGATGAAGCTCTTTTTCTCTTTAGTCGGAAAGCCTTTAAAGATGATGAG
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:4522486-4522507
AGAGATGGTATATGAGGTTAAGCCATTAAC4522486CCAAGATGAAGCTCTTTTTCTCTTTAGTCGGAAAGCCTTTAAAGATGATGAG
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:3642763-3642784
AGAGATGGTTTATGAGGTTAAGCCATTAAC3642763CCAAGATGAAGCTCTTTTTCTCTTTTGTCGGAATGCCTTTAAAGATGATGAG
Malus floribunda clone ABGA001080CT putative NBS-LRR disease resistance protein gene, partial cds.
DQ644342.1:370-391
AGAGATGGTCTATGAGGTTAAGCCATTAAC370CCAAGATGAAGCTCTTTTTCTCTTTAGTCGGAATGCCTTTAAGGATGATGAG
Malus x domestica disease resistance protein (ARGA-28) gene, partial sequence.
FJ477230.1:333-354
AGAGATGGTCTATGAGGTTAAGCCATTAAC333CCAAGATGAAGCTCTTTTTCTCTTTTGTCGGAATGCCTTTAAAGATGATGAG
Malus x domestica disease resistance protein (ARGA-8) gene, partial sequence.
FJ477236.1:393-414
AGAGATGGTATATGAGGTTAAGCCATTAAC393CCAAGATGAAGCTCTTTTTCTCTTTAGTCGGAAAGCCTTTAAAGATGATGAG
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:3920698-3920719
AGAGATGGTCTATGAGGTTAAGCCATTAAC3920698CCAAGATGAAGCTCTTTTTCTCTTTTGTCGGAATGCCTTTAAAGATGATGAG
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:3929285-3929306
AGATATGGTATATGAGGTTAAGCCATTAAC3929285CCAAGATGAAGCTCTTTTTCTCTTTAGTCGGAAAGCCTTTAAAGATGATGAG
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:3953598-3953619
AGAGATGGTATATGAGGTTAAGCAATTAAC3953598CCAAGATGAAGCTCTTTTTCTCTTTAGTCGGAAAGCCTTTAAAAATGATGAG
Malus domestica genome assembly, chromosome: 5.
OU696681.1:4412494-4412515
AGAGATGGTATATGAGGTTAAGCCATTAAC4412494CCAAGATGAAGCTCTTTTTCTCTTTAGTCGGAAAGCCTTTAAAGATGATGAG
Malus domestica genome assembly, chromosome: 5.
OU744546.1:3570798-3570819
AGAGATGGTATATGAGGTTAAGCCATTAAC3570798CCAAGATGAAGCTCTTTTTCTCTTTAGTTGGAAAGCCCTTAAAGATGATGAG
Malus domestica genome assembly, chromosome: 5.
OU744957.1:3924586-3924607
AGAGATGGTCTATGAGGTTAAGCCATTAAC3924586CCAAGATGAAGCTCTTTTTCTCTTTTGTCGGAATGCCTTTAAAGATGATGAG
Malus domestica genome assembly, chromosome: 5.
OU744957.1:3933243-3933264
AGATATGGTATATGAGGTTAAGCCATTAAC3933243CCAAGATGAAGCTCTTTTTCTCTTTAGTCGGAAAGCCTTTAAAGATGATGAG
Malus domestica genome assembly, chromosome: 5.
OU744957.1:3956419-3956440
AGAGATGGTATATGAGGTTAAGCCATTAAC3956419CCAAGATGAAGCTCTTTTTCTCTTTAGTCGGAAAGCCTTTAAAGATGATGAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAGAAAAAGAGCTTCATCTTGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGAAAAAGAGCTTCATCTTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.249 | 0.240 | search_plus_done; http://172.18.8.135:50400/match?q=GAGAAAAAGAGCTTCATCTTGG&k=0&no_gap=0&offset=0&limit=50
0.498 | 0.249 | search_minus_done; http://172.18.8.135:50400/match?q=CCAAGATGAAGCTCTTTTTCTC&k=0&no_gap=0&offset=0&limit=19
0.518 | 0.020 | cgi_end;

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