GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 15:59:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 9.
CP141918.1:23686148-23686169
CCGGATCGGGGGTTGGTCCGTACAAAGTTG23686148GAGAAGCCAACGAGGTTGAACTGGGTGTCGTTATCCTGGCCCATGATGCTGC
Malus hybrid cultivar cultivar Flame chromosome 9.
CP141935.1:24160366-24160387
TCGGATCGGGGGTTGGTCCGTACGAAGTTG24160366GAGAAGCCAACGAGGTTGAACTGGGTGTCGTTATCCTGGCCCATGGTGCTGC
Malus hybrid cultivar cultivar Flame chromosome 13.
CP141939.1:11580936-11580957
TCAGACCGGGGGTTGGTCCGTACGAAGTTG11580936GAGAAGCCAACGAGGTTGAACTGGGTGTCATTTTCCTGGCCTATGGTGCTGC
Malus hybrid cultivar cultivar Royalty chromosome 6.
CP141958.1:23532877-23532898
CCGGATCGGGGGTTGGTCCGTACAAAGTTG23532877GAGAAGCCAACGAGGTTGAACTGGGTGTCGTTATCCTGGCCCATGATGCTGC
Malus hybrid cultivar cultivar Royalty chromosome 6.
CP141975.1:24411118-24411139
CCGGATCGGGGGTTGGTCCGTACAAAGTTG24411118GAGAAGCCAACGAGGTTGAACTGGGTGTCGTTATCCTGGCCCATGATGCTGC
Malus hybrid cultivar cultivar SH6 chromosome 13.
CP143370.1:11914665-11914686
TCAGACCGGAGGTTGGTCCGTACGAAGTTG11914665GAGAAGCCAACGAGGTTGAACTGGGTGTCATTTTCCTGGCCCATGGTGCTGC
Malus domestica genome assembly, chromosome: 13.
OU696689.1:11851378-11851399
TCAGACCGGAGGTTGGTCCGTACGAAGTTG11851378GAGAAGCCAACGAGGTTGAACTGGGTGTCATTTTCCTGGCCCATGGTGCTGC
Malus domestica genome assembly, chromosome: 13.
OU744554.1:11762988-11763009
TCGGACCGGGGGTTGGTCCGTACGAAGTTG11762988GAGAAGCCAACGAGGTTGAACTGGGTGTCATTTTCCTGGCCCATGGTGCTGC
Malus domestica genome assembly, chromosome: 13.
OU744965.1:11749024-11749045
TCGGACCGGGGGTTGGTCCGTACGAAGTTG11749024GAGAAGCCAACGAGGTTGAACTGGGTGTCATTTTCCTGGCCCATGGTGCTGC
Malus domestica genome assembly, chromosome: 13.
OU745003.1:11580444-11580465
TCGGACCGGGGGTTGGTCCGTACGAAGTTG11580444GAGAAGCCAACGAGGTTGAACTGGGTGTCATTTTCCTGGCCCATGGTGCTGC
Crataegus laevigata genome assembly, chromosome: 17.
OY756954.1:20796798-20796819
TCGGACCGGGGGTTGGTCCGTACGAAGTTG20796798GAGAAGCCAACGAGGTTGAACTGGGTGTCGTTTTCCTTGCCCACGGTGCTGC
Crataegus laevigata genome assembly, chromosome: 17.
OY756954.1:20815097-20815118
TCGGACCGGGGGTTGGTCCGTACGAAGTTG20815097GAGAAGCCAACGAGGTTGAACTGGGTGTCGTTTTCCTTGTCCACGGTGCTGC
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH048_00252m, 5' end sequence.
AB450723.1:200-221
GCAGCACCATGGGCCAGGAAAACGACACCC200AGTTCAACCTCGTTGGCTTCTCCAACTTCGTACGGACCAATCCCCGGTCCGA
Pyrus pyrifolia mRNA, clone: NLE2_02_52, 5' end sequence, expressed in leaf.
HX766908.1:200-221
GCAGCACCATGGGCCAGGAAAACGACACCC200AGTTCAACCTCGTTGGCTTCTCCAACTTCGTACGGACCAATCCCCGGTCCGA
Malus hybrid cultivar cultivar SH6 chromosome 9.
CP143366.1:11684815-11684836
GCAGCACCATGGGCCAGGATAACGACACCC11684815AGTTCAACCTCGTTGGCTTCTCCAACTTCGTACGGACCAACCCCCGATCCGA
Malus hybrid cultivar cultivar SH6 chromosome 9.
CP143383.1:10224721-10224742
GCAGCACCATGGGCCAGGAAAACGACACCC10224721AGTTCAACCTCGTTGGCTTCTCCAACTTCGTACGGACCAACCCCTGGTCCGA
Malus sylvestris genome assembly, chromosome: 9.
OU696511.1:11461872-11461893
GCAGCACCATGGGCCAGGATAACGACACCC11461872AGTTCAACCTCGTTGGCTTCTCCAACTTCGTACGGACCAACCCCCGATCCGA
Malus domestica genome assembly, chromosome: 9.
OU696685.1:11535735-11535756
GCAGCACCATGGGCCAGGATAACGACACCC11535735AGTTCAACCTCGTTGGCTTCTCCAACTTCGTACGGACCAACCCCCGATCCGA
Malus domestica genome assembly, chromosome: 9.
OU744550.1:11670278-11670299
GCAGCACCATGGGCCAAGATAACGACACCC11670278AGTTCAACCTCGTTGGCTTCTCCAACTTCGTACGGACCAACCCCCGATCCGA
Malus domestica genome assembly, chromosome: 9.
OU744961.1:11659385-11659406
GCAGCACCATGGGCCAGGATAACGACACCC11659385AGTTCAACCTCGTTGGCTTCTCCAACTTCGTACGGACCAACCCCCGATCCGA
Malus domestica genome assembly, chromosome: 9.
OU744999.1:11227282-11227303
GCAGCACCATGGGCTAGGATAACGACACCC11227282AGTTCAACCTCGTTGGCTTCTCCAACTTCGTACGGACCAACCCCCGATCCGA
Malus x robusta genome assembly, chromosome: 8.
OY720332.1:11362366-11362387
GCAGCACCATGGGCCAGGATAACGACACCC11362366AGTTCAACCTCGTTGGCTTCTCCAACTTCGTACGGACCAACCCCCGATCCGA
Pyrus communis genome assembly, chromosome: 7.
OY757074.1:8720761-8720782
GCAGCACCATGGGCCAGGAAAACGACACCC8720761AGTTCAACCTCGTTGGCTTCTCCAACTTCGTACGGACCAACCCCCGGTCCGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAGAAGCCAACGAGGTTGAACT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGAAGCCAACGAGGTTGAACT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.095 | 0.087 | search_plus_done; http://172.18.8.135:50400/match?q=GAGAAGCCAACGAGGTTGAACT&k=0&no_gap=0&offset=0&limit=50
0.214 | 0.119 | search_minus_done; http://172.18.8.135:50400/match?q=AGTTCAACCTCGTTGGCTTCTC&k=0&no_gap=0&offset=0&limit=38
0.221 | 0.007 | cgi_end;

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