GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 06:02:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Anas platyrhynchos genome assembly, chromosome: U.
LS423642.1:25497458-25497477
ATATTTACTGATAATTCAGGCTGGCAAAGA25497458GAGAAGCCACTGAGGTTTGCTGAGAGAAGTCTGAAGGTTATAAAAAGAGA
Anas acuta genome assembly, chromosome: Z.
OZ009965.1:41206477-41206496
ATATTTACTGATAATTCAGGCTGGCAAAGA41206477GAGAAGCCACTGAGGTTTGCTGAGAGAAGTCTGAAGGTTATAAAAAGAGA
UFL_627_66 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES807062.1:741-760
ACACAAAATGGTGATGTCGCATTTCTAAAA741GAGAAGCCACTGAGGTTTGCCAAAGAACTCCTCTGATTTTTCCTCCAACT
UFL_379_02 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES830581.1:111-130
ACACAAAACAGTGATGTCGCATTTCTAAAA111GAGAAGCCACTGAGGTTTGCCAAAGAACTCCTCTGATTTTTCCTCCAACT
EST003262 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 13-G22 5', mRNA sequence.
GR710062.1:613-632
ACACAAAACGGTGATGTCGCATTTCTAAAA613GAGAAGCCACTGAGGTTTGCCAAAGAACTCCTCTGATTTTTCCTCCAACT
GH_TBb092C17r Gossypium hirsutum TM-1 BAC library Gossypium hirsutum genomic, genomic survey sequence.
KO208657.1:185-204
ACACAAAACAGTGATGTCGCATTTCTAAAA185GAGAAGCCACTGAGGTTTGCCAAAGAACTCCTCTGATTTTTCCTCCAACT
Gossypioides kirkii chromosome KI_08.
CP032250.1:32760865-32760884
ACACAAAACGGTGATGTCGCATTTCTAAAA32760865GAGAAGCCACTGAGGTTTGCCAAAGAACTCCTATGATTTTTCCTCCAACT
Gossypium raimondii isolate D5-4 chromosome D5_08.
CP032560.1:50971778-50971797
ACACAAAATGGTGATGTCGCATTTCTAAAA50971778GAGAAGCCACTGAGGTTTGCCAAAGAACTCCTCTGATTTTTCCTCCAACT
Gossypium herbaceum isolate Zhongcao1 chromosome 8.
CP106683.1:123724429-123724448
ACACAAAACGGTGATGTCGCATTTCTAAAA123724429GAGAAGCCACTGAGGTTTGCCAAAGAACTCCTCTGATTTTTCCTCCAACT
Lasius fuliginosus genome assembly, chromosome: 3.
OX424445.1:6140898-6140917
GGGGATGAGCCAGCCTCTCTATCAAGTTTC6140898GAGAAGCCACTGAGGTTTGCGATGAGCGTAGGCCACGTCCGAGGATATTA
GA__Ed0046H09r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0046H09r, mRNA sequence.
BQ401993.1:418-437
AGTTGGAGGAAAAATCAGAGGAGTTCTTTG418GCAAACCTCAGTGGCTTCTCTTTTAGAAATGCGACATCACCGTTTAGTGT
GA__Ed0087E02r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0087E02r, mRNA sequence.
BQ414496.1:421-440
AGTTGGAGGAAAAATCAGAGGAGTTCTTTG421GCAAACCTCAGTGGCTTCTCTTTTAGAAATGCGACATCACCGTTTAGTGT
GR__Ea22C22.f GR__Ea Gossypium raimondii cDNA clone GR__Ea22C22 5', mRNA sequence.
CO098030.1:377-396
AGTTGGAGGAAAAATCAAAGGAGTTCTTTG377GCAAACCTCAGTGGCTTCTCTTTTAAAAATGCGACATCACCATTTTGTGT
G.h.fbr-sw02835 G.h.fbr-sw Gossypium hirsutum cDNA, mRNA sequence.
CO493445.1:300-319
AGTTGGAGGAAAAATCAGAGGAGTTCTTTG300GCAAACCTCAGTGGCTTCTCTTTTAGAAATGCGACATCACTGTTTTGTGT
G.h.fbr-sw02970 G.h.fbr-sw Gossypium hirsutum cDNA, mRNA sequence.
CO493580.1:300-319
AGTTGGAGGAAAAATCAGAGGAGTTCTTTG300GCAAACCTCAGTGGCTTCTCTTTTAAAAATGCGACATCACTGTTTTGTGT
G.h.fbr-sw02975 G.h.fbr-sw Gossypium hirsutum cDNA, mRNA sequence.
CO493585.1:300-319
AGTTGGAGGAAAAATCAGAGGAGTTCTTTG300GCAAACCTCAGTGGCTTCTCTTTTAGAAATGCGACATCACTGTTTTGTGT
G.h.fbr-sw03000 G.h.fbr-sw Gossypium hirsutum cDNA, mRNA sequence.
CO493610.1:300-319
AGTTGGAGGAAAAATCAGAGGAGTTCTTTG300GCAAACCTCAGTGGCTTCTCTTTTAAAAATGCGACATCACTGTTTTGTGT
h2_B11.ab1 cotton shoot apical meristems, buds and flowers Gossypium hirsutum cDNA 3', mRNA sequence.
HO103885.1:281-300
AGTTGGAGGAAAAATCAGAGGAGTTCTTTG281GCAAACCTCAGTGGCTTCTCTTTTAGAAATGCGACATCACCATTTTGTGT
Gossypium turneri isolate D10-2 chromosome D10_08.
CP032578.1:10112502-10112521
AGTTGGAGGAAAAATCAGAGGAGTTCTTTG10112502GCAAACCTCAGTGGCTTCTCTTTTAGAAATGCGACATCACCGTTTTGTGT
Gossypium herbaceum isolate GPA1alz chromosome 8.
CP106698.1:6123078-6123097
AGTTGGAGGAAAAATCAGAGGAGTTCTTTG6123078GCAAACCTCAGTGGCTTCTCTTTTAGAAATGCGACATCACCGTTTTGTGT
Gossypium bickii isolate GPG1lz chromosome 8.
CP106712.1:123959706-123959725
AGTTGGAGGAAAAATCAGAGGAGTTCTTTG123959706GCAAACCTCAGTGGCTTCTCTTTTAGAAATGCGACATCACCGTTTTGTGT
Gossypium rotundifolium isolate GPK201 chromosome 8.
CP106729.1:25516301-25516320
AGTTAGAGGAAAAATCAGAGGAGTTCTTTG25516301GCAAACCTCAGTGGCTTCTCTTTTAGAAATGCGACATCACCGTTTTGCGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAGAAGCCACTGAGGTTTGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGAAGCCACTGAGGTTTGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.365 | 0.356 | search_plus_done; http://172.18.8.135:50400/match?q=GAGAAGCCACTGAGGTTTGC&k=0&no_gap=0&offset=0&limit=50
0.698 | 0.333 | search_minus_done; http://172.18.8.135:50400/match?q=GCAAACCTCAGTGGCTTCTC&k=0&no_gap=0&offset=0&limit=40
0.706 | 0.008 | cgi_end;

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