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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 18:15:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:2985660-2985679
GTTCTTCCATTAGGGATAGCAGATGGAACA2985660GAGAAGCTTGATTGTTGCGGTAGATTAGAACTTATATCCCCGCCGCCGCC
Brassica oleracea var. italica EST, clone AAFC_WHRI_Zennia015F02_M13orT7orSP6_ForR.
AM395034.1:137-156
GGCGGCGGCGGGGATGTAAGTTTTAATCTA137CCGCAACAATCAAGCTTCTCTGTCCCATCTGCTATCCCTAACGGAAGAAC
Brassica oleracea var. viridis mRNA, clone: KALE-050C13, 5' end sequence.
DK474716.1:362-381
GGCGGCGGCGGGGATATAAGTTCTAATCTA362CCGCAACAATCAAGCTTCTCTGTTCCATCTGCTATCCCTAATGGAAGAAC
Brassica oleracea var. viridis mRNA, clone: KALE-068M15, 5' end sequence.
DK481844.1:354-373
GGCGGCGGCGGGGATATAAGTTCTAATCTA354CCGCAACAATCAAGCTTCTCTGTTCCATCTGCTATCCCTAATGGAAGAAC
Brassica oleracea var. viridis mRNA, clone: KALE-085I02, 5' end sequence.
DK488244.1:360-379
GGCGGCGGCGGGGATATAAGTTCTAATCTA360CCGCAACAATCAAGCTTCTCTGTTCCATCTGCTATCCCTAATGGAAGAAC
Brassica oleracea var. viridis mRNA, clone: KALE-141F18, 5' end sequence.
DK509602.1:357-376
GGCGGCGGCGGGGATATAAGTTCTAATCTA357CCGCAACAATCAAGCTTCTCTGTTCCATCTGCTATCCCTAATGGAAGAAC
Brassica oleracea var. viridis mRNA, clone: KALE-141O23, 5' end sequence.
DK509822.1:357-376
GGCGGCGGCGGGGATATAAGTTCTAATCTA357CCGCAACAATCAAGCTTCTCTGTTCCATCTGCTATCCCTAATGGAAGAAC
72ETGS24_UP_013_H04_20MAY2005_018 72ETGS24 Brassica napus cDNA 5', mRNA sequence.
EE444011.1:94-113
GGCGGCGGCGGGGATATAAGTTCTAATCTA94CCGCAACAATCAAGCTTCTCTGTTCCATCTGCTATCCCTAATGGAAGAAC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_3839.
FX692625.1:385-404
GAAGGTGGCGGGGACAGAAGTTCTAATCGA385CCGCAACAATCAAGCTTCTCTGCGGCTCTTCCATCTGCTATCCCTAATGG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB004B12, complete sequence.
AC189195.2:69676-69695
GAAGGTGGCGGGGACAGAAGTTCTAATCGA69676CCGCAACAATCAAGCTTCTCTGCGGCTCTTCCATCTGCTATCCCTAATGG
Brassica napus genome assembly, chromosome: A10.
HG994364.1:18802645-18802664
GAAGGTGGCGGGGACAGAAGTTCTAATCGA18802645CCGCAACAATCAAGCTTCTCTGCGGCTCTTCCATCTGCTATCCCTAATGG
Brassica napus genome assembly, chromosome: C09.
HG994373.1:62494038-62494057
GGCGGCGGCGGGGATATAAGTTCTAATCTA62494038CCGCAACAATCAAGCTTCTCTGTTCCATCTGCTATCCCTAATGGAAGAAC
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:60442057-60442076
GGCGGCGGCGGGGATATAAGTTCTAATCTA60442057CCGCAACAATCAAGCTTCTCTGTTCCATCTGCTATCCCTAATGGAAGAAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAGAAGCTTGATTGTTGCGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGAAGCTTGATTGTTGCGG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.094 | 0.085 | search_plus_done; http://172.18.8.135:50400/match?q=GAGAAGCTTGATTGTTGCGG&k=0&no_gap=0&offset=0&limit=50
0.359 | 0.265 | search_minus_done; http://172.18.8.135:50400/match?q=CCGCAACAATCAAGCTTCTC&k=0&no_gap=0&offset=0&limit=49
0.366 | 0.008 | cgi_end;

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