GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-16 20:39:27, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Lotus japonicus mRNA, clone: MR041h03_r, 5' end sequence.
DC599261.1:530-549
CCAACTCCTCCTTCATGTCCTCCATCACCG530GAGAAGGCAGCGTTTCCAACGGCAAGATCGGCCTCGCCATCGTCGC
Lotus japonicus cDNA, clone: LjFL3-018-AC05, 5'-end sequence.
FS324099.1:548-567
CCAACTCCTCCTTCATGTCCTCCATCACCG548GAGAAGGCAGCGTTTCCAACGGCAAGATCGGCCTCGCCATCGTCGCCGCC
Lotus japonicus cDNA, clone: LjFL1-029-BD10, HTC.
AK336837.1:533-552
CCAACTCCTCCTTCATGTCCTCCATCACCG533GAGAAGGCAGCGTTTCCAACGGCAAGATCGGCCTCGCCATCGTCGCCGCC
Lotus japonicus genomic DNA, chromosome 4, clone: LjT37C07, TM0664.
AP007499.2:118618-118637
CCAACTCCTCCTTCATGTCCTCCATCACCG118618GAGAAGGCAGCGTTTCCAACGGCAAGATCGGCCTCGCCATCGTCGCCGCC
Lotus japonicus B-129 DNA, chromosome 4, complete sequence.
AP022632.1:68368305-68368324
CCAACTCCTCCTTCATGTCCTCCATCACCG68368305GAGAAGGCAGCGTTTCCAACGGCAAGATCGGCCTCGCCATCGTCGCCGCC
Ampedus sanguinolentus genome assembly, chromosome: 8.
OZ174271.1:97036533-97036552
GGATACTGGCAAGTAGGACTGAAAGACTGC97036533GAGAAGGCAGCGTTTCCAACTGGACAAGGCCTTTGGGAGTTCACTGTTTT
Lissotriton vulgaris genome assembly, chromosome: 3_1.
OZ183353.1:872937103-872937122
AACGGACACCCAATTAGGCGGAGAGCAGGT872937103GAGAAGGCAGCGTTTCCAACTCAGGCAGCAGAACAACGCAGCGGCTAGGC
Lissotriton vulgaris genome assembly, chromosome: 7.
OZ183359.1:507465402-507465421
AACGGACACCCAATTAAGCGGAGAGCAGGT507465402GAGAAGGCAGCGTTTCCAACTCAGGCAGCAGAACGACGCAGCGGCTAGGC
Lotus japonicus genomic DNA, chromosome 4, clone: LjT05D12, TM0303.
AP006417.1:74701-74720
GGCGGCGACGATGGCGAGGCCGATCTTGCC74701GTTGGAAACGCTGCCTTCTCCGGTGATGGAGGACATGAAGGAGGAGTTGG
Lissotriton vulgaris genome assembly, chromosome: 8.
OZ183360.1:29486278-29486297
GCCTAGCCGCTGCGTCCTTCTGCTGCCTGA29486278GTTGGAAACGCTGCCTTCTCACCTGCTCTCCGCTTAATTTGGTGACCTCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAGAAGGCAGCGTTTCCAAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGAAGGCAGCGTTTCCAAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.457 | 0.448 | search_plus_done; http://172.18.8.135:50800/match?q=GAGAAGGCAGCGTTTCCAAC&k=0&no_gap=0&offset=0&limit=50
0.599 | 0.142 | search_minus_done; http://172.18.8.135:50800/match?q=GTTGGAAACGCTGCCTTCTC&k=0&no_gap=0&offset=0&limit=42
0.601 | 0.002 | cgi_end;

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