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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 08:11:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Tetrao urogallus genome assembly, chromosome: 3.
OX596296.1:32438194-32438212
GGAAAATTTAGGAATATGTGCCATGGAATG32438194GAGAATTGAGAGACAAAGCAAAGCCTGGCACGTGGGAGATGGAAGGAAA
Fringilla coelebs genome assembly, chromosome: 5.
OY740729.1:67916960-67916978
ACACTCCCATTGTGTGAAGTGAGGATAGGA67916960GAGAATTGAGAGACAAAGCTGGGAATTCATAGAATTAAATGTATGGACA
Fringilla coelebs genome assembly, chromosome: 9.
OY740733.1:19825741-19825759
GAATTCTACTTTTTGTGATTGTGGAAAGAT19825741GAGAATTGAGAGACAAAGCAGAAAATATCTCTAAAGTCAGAAGTATAGG
Mobula hypostoma genome assembly, chromosome: 13.
OY992604.1:32062836-32062854
GGGGAGCACAAGCCAGTTAAAGGAAAATGA32062836GAGAATTGAGAGACAAAGCTCAAAACCTCAATACATTTTAACGATCAAA
Chroicocephalus ridibundus genome assembly, chromosome: 7.
OZ001740.1:32191392-32191410
AGAACTAGTGGTTACATGCTCAAATCAGTT32191392GAGAATTGAGAGACAAAGCAAAACCACCAAACTAATTCTCCAAACTTAG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB063M04, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC189421.1:79678-79696
GCTCGCATTGTCGATATGACTCAAGCTCTT79678GAGAATTGAGAGACAAAGCTTCGTGCAGTGGAGAGCTCTCGGCAGGACA
Brassica rapa cultivar SPAN SNP marker sequence.
EF488954.1:817-835
GCTCACATTGTCGATATGCCTCAAGCTCTT817GAGAATTGAGAGACAAAGCTTCGTGCAGTGGATAGCTCTCGGCAGGACA
Brassica napus SRAP marker 722CB247 genomic sequence.
EF608926.1:825-843
GCTCACATTGTCGATATGCCTCAAGCTCTT825GAGAATTGAGAGACAAAGCTTCGTGCAGTGGATAGCTCTCGGCAGGACA
Solanum dulcamara genome assembly, chromosome: 9.
OX359260.1:6219371-6219389
TTAGCATAGATAGCAAGTTCAATTTCAACT6219371GAGAATTGAGAGACAAAGCTTTGGTATTTTGGTGATAGTCCAGCATAGT
Octopus vulgaris genome assembly, chromosome: 21.
OX597834.1:16336696-16336714
TATTTATAATAGAATTTATTTTAAACATTT16336696GAGAATTGAGAGACAAAGCTGAACCTTGGCACCAAGACACAAACTTATC
Calliopum simillimum genome assembly, chromosome: 1.
OX638368.1:7761966-7761984
GGGGCTTCTAACGAACGAGATTGCTAGATT7761966GAGAATTGAGAGACAAAGCAACTAGCAAAAATGCATAACTCCTAGAGTG
Sciurus carolinensis genome assembly, chromosome: 4.
LR738593.1:155884478-155884496
TCTCTTTTTTGTATACCCATCTTTTCCATG155884478GCTTTGTCTCTCAATTCTCTGGACCTAGTCCCTTAGAGGGGTTTAACTG
Sciurus vulgaris genome assembly, chromosome: 5.
LR738615.1:159811216-159811234
TCTCTTTTTTGTATACCCATCTTTTCCATG159811216GCTTTGTCTCTCAATTCTCTGGACCTAGTCCCTTAGAGGGGTTTAACTG
Daucus carota subsp. sativus cultivar DH1 chromosome 2.
CP093344.1:44340338-44340356
GGCTCTGGACTGGTTGGTCTAGGCCAAGGG44340338GCTTTGTCTCTCAATTCTCAGCTATCAGACACAATTCACAACAAATTTT
Daucus carota isolate Kuroda chromosome 2.
CP125302.1:42134257-42134275
GGCTCTGGACTGGTTGGTCTAGGCCAAGGG42134257GCTTTGTCTCTCAATTCTCAGCTATCAGACACAATTCACAACAAATTTT
Brassica rapa genome, scaffold: A09.
LR031568.1:38069953-38069971
TGTCCTGCCGAGAGCTCTCCACTGCACGAA38069953GCTTTGTCTCTCAATTCTCAAGAGCTTGAGTCATATCGACAATGCGAGC
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:48521257-48521275
TGTCCTGCCGAGAGCTCTCCACTGCACGAA48521257GCTTTGTCTCTCAATTCTCAAGAGCTTGAGTCATATCGACAATGCGAGC
Calliopum simillimum genome assembly, chromosome: 4.
OX638371.1:32370122-32370140
CACTCTAGGAGCTATGCATTTTTGCTAGTT32370122GCTTTGTCTCTCAATTCTCAATCTAGCCCCATTTTTTGCTAGTTGTCTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAGAATTGAGAGACAAAGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGAATTGAGAGACAAAGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.396 | 0.387 | search_plus_done; http://172.18.8.135:50400/match?q=GAGAATTGAGAGACAAAGC&k=0&no_gap=0&offset=0&limit=50
0.500 | 0.104 | search_minus_done; http://172.18.8.135:50400/match?q=GCTTTGTCTCTCAATTCTC&k=0&no_gap=0&offset=0&limit=39
0.505 | 0.005 | cgi_end;

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