GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 01:33:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KR 1020010006352-A/5: DNA Marker, primer kits, and method for effective detection ofclubroot disease resistant plant.
DI074596.1:1-20
1GAGACGAGTTGACGAAGTAA
KR 1020040013638-A/2: DNA Marker for the Clubroot Resistant Gene.
DI132648.1:1-20
1GAGACGAGTTGACGAAGTAA
Brassica rapa clone BrH69E01, WORKING DRAFT SEQUENCE, 2 unordered pieces.
AC137927.1:78268-78287
GACGACAATACCTGCAGGTGTAGCGCGGTT78268GAGACGAGTTGACGAAGTAACAGAACTTGGTATTGTCAGAGTTGCACCTT
Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH069E01, complete sequence.
AC172878.1:41874-41893
GACGACAATACCTGCAGGTGTAGCGCGGTT41874GAGACGAGTTGACGAAGTAACAGAACTTGGTATTGTCAGAGTTGCACCTT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039B11, complete sequence.
AC241020.1:131223-131242
GACGACAATACCTGCAGGTGTAGCGCGGTT131223GAGACGAGTTGACGAAGTAACAGAACTTGGTATTGTCAGAGTTGCACCTT
KR 1020010006352-A/1: DNA Marker, primer kits, and method for effective detection ofclubroot disease resistant plant.
DI085192.1:206-225
AAGGTGCAACTCTGACAATACCAAGTTCTG206TTACTTCGTCAACTCGTCTCAACCGCGCTACACCTGCATGTACCGCAGTC
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:24967784-24967803
AAGGTGCAACTCTGACAATACCAAGTTCTG24967784TTACTTCGTCAACTCGTCTCAACCGCGCTACACCTGCAGGTATTGTCGTC
Brassica napus genome assembly, chromosome: A03.
HG994357.1:25081309-25081328
AAGGTGCAACTCTGACAATACCAAGTTCTG25081309TTACTTCGTCAACTCGTCTCAACCGCGCTACACCTGCAGGTATTGTCGTC
Brassica rapa genome, scaffold: A03.
LR031572.1:24577813-24577832
AAGGTGCAACTCTGACAATACCAAGTTCTG24577813TTACTTCGTCAACTCGTCTCAACCGCGCTACACCTGCAGGTATTGTCGTC
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:24705650-24705669
AAGGTGCAACTCTGACAATACCAAGTTCTG24705650TTACTTCGTCAACTCGTCTCAACCGCGCTACACCTGCAGGTATTGTCGTC
Tiphia femorata genome assembly, chromosome: 11.
OX090905.1:13576092-13576111
CCGGGGTAAGTTCCAGTCTTACCCGCCCGG13576092TTACTTCGTCAACTCGTCTCCGGCGCCGACGATGTCGGACCGAGTGACGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAGACGAGTTGACGAAGTAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGACGAGTTGACGAAGTAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.119 | 0.110 | search_plus_done; http://172.18.8.135:50400/match?q=GAGACGAGTTGACGAAGTAA&k=0&no_gap=0&offset=0&limit=50
0.167 | 0.048 | search_minus_done; http://172.18.8.135:50400/match?q=TTACTTCGTCAACTCGTCTC&k=0&no_gap=0&offset=0&limit=45
0.171 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).