GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 08:01:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Muscardinus avellanarius genome assembly, chromosome: 19.
OY726576.1:19109927-19109945
GAAGGAGTCCCTGGCACAGAGTGCCAGCCC19109927GAGAGAGGGTGGTGTTATTTCCCCAGGTAAGGCAGCGGAGCTAGCTGGA
Erpetoichthys calabaricus genome assembly, chromosome: 1.
LR536432.2:280320592-280320610
CACCTAATGTATGCGGTATCACCTCAAGAT280320592GAGAGAGGGTGGTGTTATTTACAGTTTTGTCTCCTTCCTGCCTCACATC
Salmo trutta genome assembly, chromosome: 27.
LR584424.1:42199140-42199158
ACTGGTAGTTAGGTCTAAAACAAGAGGTTT42199140GAGAGAGGGTGGTGTTATTATTATATATTAGTTCGGTCTAGAGCCTGGA
Streptopelia turtur genome assembly, chromosome: 20.
LR594566.1:16313683-16313701
GGGAGGATGAGAGGATATAGCAGTTGGTGT16313683GAGAGAGGGTGGTGTTATTTCTTAACGGAAGAGACCTTCATTTTATTTT
Larimichthys crocea genome assembly, chromosome: XX.
LT972187.1:14217667-14217685
TACAGTTACAGCTACAGAGGCAAAGATGGA14217667GAGAGAGGGTGGTGTTATTGTTATATTATGGTGTGGCTGTGTGGAGGTG
Solea senegalensis genome assembly, chromosome: N.
OW185645.1:10733775-10733793
TAAGACAAAACACATTCGTAGAAGAATGAA10733775GAGAGAGGGTGGTGTTATTTAGAAGTAAATATTTCCCTGTGAATAGAAT
Sequence 19 from Patent WO2014080034.
JC528729.1:1-19
1GAGAGAGGGTGGTGTTATT
Phoenix dactylifera microsatellite DNA, clone CIR085.
AJ571686.1:182-200
GCGTATTGAGAGGGTGCAATTGCATTTATT182GAGAGAGGGTGGTGTTATTGCTTCATCCACAGAGAGAGAGAGAGAGAGA
Juncus effusus genome assembly, chromosome: 1.
OX326974.1:7458905-7458923
CAATCGCATTTATTGTGAGTGAGAGAGAAA7458905GAGAGAGGGTGGTGTTATTGCATTTGCATTGCAATATTCAAGAGAGAGA
Sambucus nigra genome assembly, chromosome: 4.
OX422210.1:310915282-310915300
AAGGTAAATGGATAAGATGTTGTTTGTTTG310915282GAGAGAGGGTGGTGTTATTTTGGTTCCCCAAGTTCACGTAGACGATATA
Sambucus nigra genome assembly, chromosome: 11.
OX422217.1:184165671-184165689
AGGGGGAGTGAATAAGACATCATTTGTGAG184165671GAGAGAGGGTGGTGTTATTTTTTTTGCCTGGGTTTATGTGGATGATATT
Crassostrea gigas genome assembly, linkage group: LG1.
LR761634.1:23056819-23056837
TTAATCATCTATTCACAGAGGTTAGAAAGT23056819GAGAGAGGGTGGTGTTATTTAGGTCTGATAAAATGAAAAACATTCGCTC
Aplidium turbinatum genome assembly, chromosome: 17.
OU964934.1:12352446-12352464
ATCAACCGTTGAAACACATTTTCTAAGAAA12352446GAGAGAGGGTGGTGTTATTTCTAAGTGACAACAAAATAGCATAGATTTA
Epinotia bilunana genome assembly, chromosome: 2.
OX346254.1:34180235-34180253
CATAGTCGACTCTTACGACACCCACGGGAA34180235GAGAGAGGGTGGTGTTATTCTAACCCGACACCACACGGTCAATAGTCAA
Asteroscopus sphinx genome assembly, chromosome: 6.
OX453007.1:27083337-27083355
GGTGAATCACTTAGTCGACACCCATGAGAA27083337GAGAGAGGGTGGTGTTATTCTCCAAGTCCGGCACCACACGGAAAGTTTA
Aproaerema taeniolella genome assembly, chromosome: 3.
OX465245.1:13484341-13484359
CTTAATCGCCTCTTACGACACCCACAGAAA13484341GAGAGAGGGTGGTGTTATTCTCAACCGATCATCACATGGCAAAGGTTCA
Aproaerema taeniolella genome assembly, chromosome: 19.
OX465261.1:5933514-5933532
TAATGTTGCATTTTACAACACCCACGGGTA5933514GAGAGAGGGTGGTGTTATTCGTGACATGATTTTTCTATCACAAACATAG
Ceriagrion tenellum genome assembly, chromosome: 12.
OY720644.1:42611007-42611025
AGGACTCCCCAGAGACGAGGGGGGATATGT42611007GAGAGAGGGTGGTGTTATTGGTGCAGGGTCGTTCGGCGATATTTGCGAT
Lymantria dispar genome assembly, chromosome: Z.
OY755125.1:22390300-22390318
CTGCATGGCAATGATACAGCGACTGAAGTT22390300GAGAGAGGGTGGTGTTATTGCTCGGGAAGAGACGGGCGCACTCGGCATT
Magelona johnstoni genome assembly, chromosome: 14.
OZ012697.1:35651431-35651449
AAAGCCTGTGACTCAAACCGCAGATAGAGA35651431GAGAGAGGGTGGTGTTATTCAAATCTCCCGATCCTCTTTCAGGAAGGGG
Acomys russatus genome assembly, chromosome: 23.
LR877234.1:41710736-41710754
TATTTTTTAATGATTAATGTTGTTGCTCAA41710736AATAACACCACCCTCTCTCTTTGTGAAGAAGCAATTCATAGTGAACAAA
Acomys percivali genome assembly, chromosome: 12.
OU015753.1:91885848-91885866
TATTTTTTAATGATTAATGTTGTTGCTCAA91885848AATAACACCACCCTCTCTCTTTGTGAAGAAGCAATTCAGCGTGAACAAA
Larimichthys crocea genome assembly, chromosome: XVIII.
LT972184.1:10248469-10248487
CACCTCCACACAGCCACACCATAATATAAC10248469AATAACACCACCCTCTCTCTCCATCTTTGCCTCTGTAGCTGTAACTGTA
Solea solea genome assembly, chromosome: 16.
OY282549.1:16150759-16150777
ATTCTATTCACAGAAAAATATTTACTTCTA16150759AATAACACCACCCTCTCTCTTCATTCTTCTACGAATGTGTTTTGTCTTA
Rattus norvegicus clone CH230-12H7, WORKING DRAFT SEQUENCE, 10 unordered pieces.
AC111852.3:66391-66409
CACATTTCTCCTTTGCCAGTCCTTTGCACC66391AATAACACCACCCTCTCTCTACCCTGCATTCCTAGGATCCATTTCTTAG
Rattus norvegicus clone CH230-11G16, WORKING DRAFT SEQUENCE, 72 unordered pieces.
AC142175.3:111217-111235
CACATTTCTCCTTTGCCAGTCCTTTGCACC111217AATAACACCACCCTCTCTCTACCCTGCATTCCTAGGATCCATTTCTTAG
Triticum aestivum genome assembly, chromosome: 4B.
LR862518.1:399992643-399992661
TTTCAAATCTCTAATAATATGGAAAAATGA399992643AATAACACCACCCTCTCTCCGTTTCATACAATTGCAATGTGCAGAAGCA
Triticum aestivum genome assembly, chromosome: 4B.
LR862539.1:394175322-394175340
TTTCAAATCTCTAATAATATGGAAAAATGA394175322AATAACACCACCCTCTCTCCGTTTCATACAATTGCAATGTGCAGAAGCA
Triticum aestivum genome assembly, chromosome: 4B.
LR862560.1:402468186-402468204
TTTCAAATCTCTAATAATATGGAAAAATGA402468186AATAACACCACCCTCTCTCCGTTTCATACAATTGCAATGTGCAGAAGCA
Triticum aestivum genome assembly, chromosome: 4B.
LR865468.1:398966692-398966710
TTTCAAATCTCTAATAATATGGAAAAATGA398966692AATAACACCACCCTCTCTCCGTTTCATACAATTGCAATGTGCAGAAGCA
Triticum aestivum genome assembly, chromosome: 4B.
LR865489.1:396223989-396224007
TTTCAAATCTCTAATAATATGGAAAAATGA396223989AATAACACCACCCTCTCTCCGTTTCATACAATTGCAATGTGCAGAAGCA
Triticum aestivum genome assembly, chromosome: 4B.
LR865510.1:394148367-394148385
TTTCAAATCTCTAATAATATGGAAAAATGA394148367AATAACACCACCCTCTCTCCGTTTCATACAATTGCAATGTGCAGAAGCA
Triticum aestivum genome assembly, chromosome: 4B.
LR865749.1:420255662-420255680
TTTCAAATCTCTAATAATATTGAAAAATGA420255662AATAACACCACCCTCTCTCCGTTTCATACAATTGCAATGTGCAGAAGCA
Triticum aestivum genome assembly, chromosome: 4B.
LR865770.1:394192221-394192239
TTTCAAATCTCTAATAATATGGAAAAATGA394192221AATAACACCACCCTCTCTCCGTTTCATACAATTGCAATGTGCAGAAGCA
Triticum aestivum genome assembly, chromosome: 4B.
LR877319.1:413239540-413239558
TTTCAAATCTCTAATAATATGGAAAAATGA413239540AATAACACCACCCTCTCTCCGTTTCATACAATTGCAATGTGCAGAAGCA
Triticum aestivum genome assembly, chromosome: 4B.
LR878445.1:398184762-398184780
TTTCAAATCTCTAATAATATGGAAAAATGA398184762AATAACACCACCCTCTCTCCGTTTCATACAATTGCAATGTGCAGAAGCA
Triticum aestivum genome assembly, chromosome: 4B.
LS992090.1:400392819-400392837
TTTCAAATCTCTAATAATATGGAAAAATGA400392819AATAACACCACCCTCTCTCCGTTTCATACAATTGCAATGTGCAGAAGCA
Triticum turgidum subsp. durum genome assembly, chromosome: 4B.
LT934118.1:404483457-404483475
TTTCAAATCTCTAATAATATGGAAAAATGA404483457AATAACACCACCCTCTCTCCGTTTCATACAATTGCAATGTGCAGAAGCA
Triticum aestivum genome assembly, chromosome: 4B.
OU015731.1:414464559-414464577
TTTCAAATCTCTAATAATATGGAAAAATGA414464559AATAACACCACCCTCTCTCCGTTTCATACAATTGCAATGTGCAGAAGCA
Triticum aestivum genome assembly, chromosome: 4B.
OU343179.1:419823242-419823260
TTTCAAATCTCTAATAATATGGAAAAATGA419823242AATAACACCACCCTCTCTCCGTTTCATACAATTGCAATGTGCAGAAGCA
Triticum aestivum genome assembly, chromosome: 4B.
OU963882.1:406408323-406408341
TTTCAAATCTCTAATAATATGGAAAAATGA406408323AATAACACCACCCTCTCTCCGTTTCATACAATTGCAATGTGCAGAAGCA
Triticum aestivum genome assembly, chromosome: 4B.
OV100747.1:400208524-400208542
TTTCAAATCTCTAATAATATGGAAAAATGA400208524AATAACACCACCCTCTCTCCGTTTCATACAATTGCAATGTGCAGAAGCA
Triticum aestivum genome assembly, chromosome: 4B.
OW530320.1:400208524-400208542
TTTCAAATCTCTAATAATATGGAAAAATGA400208524AATAACACCACCCTCTCTCCGTTTCATACAATTGCAATGTGCAGAAGCA
Luzula sylvatica genome assembly, chromosome: 3.
OX326958.1:18765792-18765810
CTTTCTCTCTCTTGAATGCAATGCGAATGC18765792AATAACACCACCCTCTCTCTCTCTTTCTCTCTCTCACAATAAATGCGAT
Sambucus nigra genome assembly, chromosome: 5.
OX422211.1:614752479-614752497
TATATCTACCATATATACTTGGGCAACCAA614752479AATAACACCACCCTCTCTCCTAACGAACAACGACATACTATCTCCCCCT
Triticum aestivum genome assembly, chromosome: 4B.
OX637235.1:345685399-345685417
TTTCAAATCTCTAATAATATGGAAAAATGA345685399AATAACACCACCCTCTCTCCGTTTCATACAATTGCAATGTGCAGAAGCA
Cordylochernes scorpioides isolate IN4F17 chromosome 15.
CP092877.1:47993986-47994004
ATTGACAATTATGATGGGTGGATGTCACTT47993986AATAACACCACCCTCTCTCTCTCTCTGCATATCTCTCTATCACCCTTTT
Cordylochernes scorpioides isolate IN4F17 chromosome 15.
CP092877.1:48140430-48140448
ATTGACAATTATGATGGGTGGATGTCACTT48140430AATAACACCACCCTCTCTCTCTCTCTCTGCATATCTCTCTATCACCCTT
Pollenia amentaria genome assembly, chromosome: 3.
OX031008.1:168927760-168927778
AAGCACCTTTTATGCATGGCTTGTGTATTT168927760AATAACACCACCCTCTCTCACAATCATTTAACGAAATTTGTTTAATAAT
Asteroscopus sphinx genome assembly, chromosome: 6.
OX453007.1:16608301-16608319
AGCAGGTTCCATGTGGTGCCGGACGTGAAA16608301AATAACACCACCCTCTCTCTTCTCATGGGTGTCGTAAAAGGCGACTAAG
Asteroscopus sphinx genome assembly, chromosome: 12.
OX453013.1:23793340-23793358
TATGTGTTCCGTGTGGTGCCGGACGTAAAG23793340AATAACACCACCCTCTCTCTTCTTATGGGTGTCGTAAAAGACGCCTGAG
Asteroscopus sphinx genome assembly, chromosome: 18.
OX453019.1:24542547-24542565
AACCTGTTCCGTGTGGTGCTGGACGTAAAG24542547AATAACACCACCCTCTCTCTTCTCATGGGTGTCGTAAAAGGCGACTAAG
Aproaerema taeniolella genome assembly, chromosome: 3.
OX465245.1:2332235-2332253
TTAATCTAAGCCGTGTGGTGATCGGTTGAG2332235AATAACACCACCCTCTCTCTTTCCGTGGGTGTCGTAAGAGGCGACTATG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAGAGAGGGTGGTGTTATT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGAGAGGGTGGTGTTATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.174 | 0.166 | search_plus_done; http://172.18.8.135:50400/match?q=GAGAGAGGGTGGTGTTATT&k=0&no_gap=0&offset=0&limit=50
0.220 | 0.045 | search_minus_done; http://172.18.8.135:50400/match?q=AATAACACCACCCTCTCTC&k=0&no_gap=0&offset=0&limit=30
0.241 | 0.022 | cgi_end;

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