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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-03-14 20:59:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_12336.
FX702127.1:1049-1068
GGACAGGAGGAGAAGAGTAGGCGGAAGAAA1049GAGAGGAGTCTCTGTGCGCTGAAGATGCTCTAATTGCCTTCGCTGCGAGG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_8805.
FX736659.1:1037-1056
GGACAGGAGGAGAAGAGTAGGCGGAAGAAA1037GAGAGGAGTCTCTGTGCGCTGAAGATGCTCTAATTGCCTTCGCTGCGAGG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_3135.
FX790047.1:1154-1173
CAAGAGGAGAAGAAGAGTAGGCAGAGGAAA1154GAGAGGAGTCTCTGTGCGCTGAAGATGCTCTAATCGCCTTCGCTGCTAGC
TSA: Raphanus sativus RS25493 mRNA sequence.
JT810040.1:1019-1038
CAGGAGGAGAAGAAGAGTAGGCAGAGGAAA1019GAGAGGAGTCTCTGTGCGCTGAAGATGCTCTAATCGCCTTCGCTGCTAGC
KBrB028C13R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB028C13, genomic survey sequence.
DX031364.1:237-256
GGACAGGAGGAGAAGAGTAGGCGGAAGAAA237GAGAGGAGTCTCTGTGCGCTGAAGATGCTCTAATTGCCTTCGCTGCGAGG
BOT01-65I12TF BOT01 Brassica oleracea genomic clone BOT01-65I12, genomic survey sequence.
FI719467.1:361-380
GAACAGGAGGGGAAGAGTAGGCGGAGGAAA361GAGAGGAGTCTCTGTGCGCTGAAGATGCTCTAATTGCCTTCGCGGCGAGG
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:69213081-69213100
GAACAGGAGGGGAAGAGTAGGCGGAGGAAA69213081GAGAGGAGTCTCTGTGCGCTGAAGATGCTCTAATTGCCTTCGCGGCGAGG
Raphanus sativus genome assembly, chromosome: 3.
OY743209.1:27243760-27243779
CAGGAGGAGAAGAAGAGTAGGCAGAGGAAA27243760GAGAGGAGTCTCTGTGCGCTGAAGATGCTCTAATCGCCTTCGCTGCTAGC
36RDBRG_UP_033_B04_23JUN2004_030 Brassica rapa 36RDBRG Brassica rapa cDNA 5', mRNA sequence.
EE518835.1:169-188
CCTCGCAGCGAAGGCAATTAGAGCATCTTC169AGCGCACAGAGACTCCTCTCTTTCTTCCGCCTACTCTTCTCCTCCTGTCC
24RDBNH_UP_152_D07_13DEC2006_057 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
ES920167.1:206-225
CCTCGCCGCGAAGGCAATTAGAGCATCTTC206AGCGCACAGAGACTCCTCTCTTTCCTCCGCCTACTCTTCCCCTCCTGTTC
9RDBNGA_UP_193_G10_13SEPT2006_068 Brassica napus 9RDBNGA Brassica napus cDNA 5', mRNA sequence.
ES959619.1:248-267
CCTCGCCGCGAAGGCAATTAGAGCATCTTC248AGCGCACAGAGACTCCTCTCTTTCCTCCGCCTACTCTTCCCCTCCTGTTC
0090952 Brassica napus Cold acclimation - dark Brassica napus cDNA, mRNA sequence.
EV193468.1:241-260
CCTCGCAGCGAAGGCAATTAGAGCATCTTC241AGCGCACAGAGACTCCTCTCTTTCTTCCGCCTACTCTTCTCCTCCTGTCC
RS2AT35TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EW725541.1:312-331
GCTAGCAGCGAAGGCGATTAGAGCATCTTC312AGCGCACAGAGACTCCTCTCTTTCCTCTGCCTACTCTTCTTCTCCTCCTG
BR024746 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-073G07 5', mRNA sequence.
EX040102.1:184-203
CCTCGCAGCGAAGGCAATTAGAGCATCTTC184AGCGCACAGAGACTCCTCTCTTTCTTCCGCCTACTCTTCTCCTCCTGTCC
BR025478 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-083C09 5', mRNA sequence.
EX040834.1:184-203
CCTCGCAGCGAAGGCAATTAGAGCATCTTC184AGCGCACAGAGACTCCTCTCTTTCTTCCGCCTACTCTTCTCCTCCTGTCC
BR044868 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-069D09 5', mRNA sequence.
EX060224.1:97-116
CCTCGCAGCGAAGGCAATTAGAGCATCTTC97AGCGCACAGAGACTCCTCTCTTTCTTCCGCCTACTCTTCTCCTCCTGTCC
BR100014 whole plant cDNA library KFYP Brassica rapa subsp. pekinensis cDNA clone KFYP-107E02 5', mRNA sequence.
EX113724.1:175-194
CCTCGCAGCGAAGGCAATTAGAGCATCTTC175AGCGCACAGAGACTCCTCTCTTTCTTCCGCCTACTCTTCTCCTCCTGTCC
BR119188 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-57C10 5', mRNA sequence.
EX135358.1:187-206
CCTCGCAGCGAAGGCAATTAGAGCATCTTC187AGCGCACAGAGACTCCTCTCTTTCTTCCGCCTACTCTTCTCCTCCTGTCC
RS2DR26TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY939094.1:299-318
GCTAGCAGCGAAGGCGATTAGAGCATCTTC299AGCGCACAGAGACTCCTCTCTTTCCTCTGCCTACTCTTCTTCTCCTCCTG
RS2EC65TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY940942.1:66-85
GCTAGCAGCGAAGGCGATTAGAGCATCTTC66AGCGCACAGAGACTCCTCTCTTTCCTCTGCCTACTCTTCTTCTCCTCCTG
RR3FF28TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD551036.1:293-312
GCTAGCAGCGAAGGCGATTAGAGCATCTTC293AGCGCACAGAGACTCCTCTCTTTCCTCTGCCTACTCTTCTTCTCCTCCTG
BN18DYSC_UP_179_G09_4APR2008_067 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG568259.1:243-262
CCTCGCCGCGAAGGCAATTAGAGCATCTTC243AGCGCACAGAGACTCCTCTCTTTCCTCCGCCTACTCTTCCCCTCCTGTTC
BN18DYSC_UP_204_D06_7APR2008_042 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG570394.1:178-197
CCTCGCCGCGAAGGCAATTAGAGCATCTTC178AGCGCACAGAGACTCCTCTCTTTCCTCCGCCTACTCTTCCCCTCCTGTTC
Raphanus sativus mRNA, clone: RSCS03H09, 5' end sequence.
FY447047.1:270-289
GCTAGCAGCGAAGGCGATTAGAGCATCTTC270AGCGCACAGAGACTCCTCTCTTTCCTCTGCCTACTCTTCTTCTCCTCCTG
BNAOV1GH_T3_111_B11_22SEPT2007_093 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR445740.1:212-231
CCTCGCCGCGAAGGCAATTAGAGCATCTTC212AGCGCACAGAGACTCCTCTCTTTCCTCCGCCTACTCTTCCCCTCCTGTTC
MMN2_269 Brassica rapa mature median nectary, normalized (MMN2) Brassica rapa cDNA, mRNA sequence.
GR725654.1:219-238
CCTCGCAGCGAAGGCAATTAGAGCATCTTC219AGCGCACAGAGACTCCTCTCTTTCCTCCGCCTACTCTTCTCCTCCTGTCC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_12404.
FX659782.1:330-349
GCTAGCAGCGAAGGCGATTAGAGCATCTTC330AGCGCACAGAGACTCCTCTCTTTCCTCTGCCTACTCTTCTTCTCCTCCTG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB071A06, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces.
AC232518.1:112232-112251
CCTCGCAGCGAAGGCAATTAGAGCATCTTC112232AGCGCACAGAGACTCCTCTCTTTCTTCCGCCTACTCTTCTCCTCCTGTCC
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:7477207-7477226
CCTCGCAGCGAAGGCAATTAGAGCATCTTC7477207AGCGCACAGAGACTCCTCTCTTTCCTCCGCCTACTCTTCTCCTCCTGTCC
Brassica napus genome assembly, chromosome: A03.
HG994357.1:7464545-7464564
CCTCGCAGCGAAGGCAATTAGAGCATCTTC7464545AGCGCACAGAGACTCCTCTCTTTCTTCCGCCTACTCTTCTCCTCCTGTCC
Brassica napus genome assembly, chromosome: C03.
HG994367.1:10083832-10083851
CCTCGCCGCGAAGGCAATTAGAGCATCTTC10083832AGCGCACAGAGACTCCTCTCTTTCCTCCGCCTACTCTTCCCCTCCTGTTC
Brassica rapa genome, scaffold: A03.
LR031572.1:7521333-7521352
CCTCGCAGCGAAGGCAATTAGAGCATCTTC7521333AGCGCACAGAGACTCCTCTCTTTCTTCCGCCTACTCTTCTCCTCCTGTCC
Raphanus sativus genome assembly, chromosome: 6.
LR778315.1:8278522-8278541
GCTAGCAGCGAAGGCGATTAGAGCATCTTC8278522AGCGCACAGAGACTCCTCTCTTTCCTCTGCCTACTCTTCTTCTCCTCCTG
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:7615462-7615481
CCTCGCAGCGAAGGCAATTAGAGCATCTTC7615462AGCGCACAGAGACTCCTCTCTTTCTTCCGCCTACTCTTCTCCTCCTGTCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAGAGGAGTCTCTGTGCGCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGAGGAGTCTCTGTGCGCT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.255 | 0.247 | search_plus_done; http://172.18.8.135:50400/match?q=GAGAGGAGTCTCTGTGCGCT&k=0&no_gap=0&offset=0&limit=50
1.867 | 1.611 | search_minus_done; http://172.18.8.135:50400/match?q=AGCGCACAGAGACTCCTCTC&k=0&no_gap=0&offset=0&limit=42
1.883 | 0.017 | cgi_end;

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