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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:52:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Geotrypetes seraphini genome assembly, chromosome: 3.
LR699148.1:4989985-4990004
GAATTACATTATCTGGATTGGCACGTCCAA4989985GAGATCGTGGTGGTTTTGGTCTCCGTAGTCTCCGCCTGCTGTCATGGGCG
Geotrypetes seraphini genome assembly, chromosome: 7.
LR699152.1:190115497-190115516
GAATTACATTATCTGGATTGGCACGTCCAA190115497GAGATCGTGGTGGTTTTGGTCTCCGTAGTCTCCGCCTGCTGTCATGGGCG
VBL1_11_L01_E001.g1 Normalized cDNA library from cotyledon and young leaves of peanut Arachis hypogaea cDNA, mRNA sequence.
GO257501.1:168-187
GTTCTGGTGGCAGGTGGGGATCAGGGAGGG168GAGATCGTGGTGGTTTTGGTGG
XTP133K23.F XTP Zostera marina genomic 5', genomic survey sequence.
KG975962.1:40-59
ATCGATCGACTATGGCGGAGCGAGGTGCGG40GAGATCGTGGTGGTTTTGGTCGTGGATTTGGACGAGGAGGTGACCGTGGA
Trifolium repens isolate ACLI19 chromosome 04_Occ.
CP125842.1:63474482-63474501
CACTCATCAACAACATGGCTGAACGTGGCG63474482GAGATCGTGGTGGTTTTGGTGGCGGCTTCGGTGGTCGTGGTGACAGAGGT
Trifolium repens isolate ACLI19 chromosome 04_Pall.
CP125843.1:58942909-58942928
CACTCATCATCAACATGGCTGAACGTGGCG58942909GAGATCGTGGTGGTTTTGGTAGCGGTTTCGGTGGTCGTGGTGACAGAGGT
Rhingia campestris genome assembly, chromosome: 4.
OW052185.1:49330589-49330608
CAGGAGCCCCTAAGACCTCCCCCCTTGTGG49330589GAGATCGTGGTGGTTTTGGTTTATACCGAAGGCTGGGAGCGTATGGTATT
Rhagonycha lutea genome assembly, chromosome: 2.
OY294037.1:9580127-9580146
AAATAACTCTTTGTTTAACAGGACAGCCAG9580127GAGATCGTGGTGGTTTTGGTCCACAGGGACCTAAAGGTCCTTCCGGTGAA
Geotrypetes seraphini genome assembly, chromosome: 3.
LR699148.1:369783133-369783152
CGCCCATGACAGCAGGCGGAGACTACGGAG369783133ACCAAAACCACCACGATCTCTTGGACGTGCCAATCCAGATAATGTAATTC
Geotrypetes seraphini genome assembly, chromosome: 4.
LR699149.1:158149443-158149462
CGCCCATGACAGCAGGCGGAGACTACGGAG158149443ACCAAAACCACCACGATCTCTTGGACGTGCCAATCCAGACAATGTAATTC
Geotrypetes seraphini genome assembly, chromosome: 5.
LR699150.1:121939951-121939970
CGCCCATGACAGCAGGCGGAGACTACGGAG121939951ACCAAAACCACCACGATCTCTTGGACGTGCCAATCCAGATAATGTAATTC
Geotrypetes seraphini genome assembly, chromosome: 12.
LR699157.1:62658679-62658698
CGCCCATGACAGCAGGCGGAGACTACGGAG62658679ACCAAAACCACCACGATCTCTTGGACGTGCCAATCCAGATAATGTAATTC
TSA: Lens culinaris contig13529.Lecu mRNA sequence.
JI859771.1:467-486
ACTTCCACCTCTACCACCACCGCCACCACC467ACCAAAACCACCACGATCTCTTCCACCACCACCACCACTACTACCATAAC
XTP074I17.F XTP Zostera marina genomic 5', genomic survey sequence.
KG979289.1:508-527
TCCACGGTCACCTCCTCGTCCAAATCCACG508ACCAAAACCACCACGATCTCCCGCACCTCGCTCCGCCATTGTCGATCGAT
Trifolium fragiferum genome assembly, chromosome: 2.
OX940790.1:770361-770380
ACCTCTGTCACCACGGCCACCGAATCCGCT770361ACCAAAACCACCACGATCTCCGCCACGTTCAGCCATGTTGATGATGAGTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAGATCGTGGTGGTTTTGGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGATCGTGGTGGTTTTGGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.271 | 0.262 | search_plus_done; http://172.18.8.135:50400/match?q=GAGATCGTGGTGGTTTTGGT&k=0&no_gap=0&offset=0&limit=50
0.432 | 0.161 | search_minus_done; http://172.18.8.135:50400/match?q=ACCAAAACCACCACGATCTC&k=0&no_gap=0&offset=0&limit=42
0.437 | 0.005 | cgi_end;

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