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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:11:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH005_00593m, 5' end sequence.
AB450693.1:1-23
1GAGATTTCCTCCCTCCCTCTTCTCCCACCCCTCGTACCATTTTAAACCCTATA
Mdfrt3101p09.y1 Mdfrt Malus domestica cDNA clone Mdfrt3101p09 5' similar to TR:O04060 O04060 LONGEST ORF, mRNA sequence.
CV629618.1:7-29
CGTGAC7GAGATTTCCTCCCTCCCTCTTCTCCCACCCCTCGTACCATTTTAAACCCTATA
Mdfrt3105d10.y1 Mdfrt Malus domestica cDNA clone Mdfrt3105d10 5' similar to TR:O04060 O04060 LONGEST ORF, mRNA sequence.
CV630974.1:7-29
CGTGAC7GAGATTTCCTCCCTCCCTCTTCTCCCACCCCTCGTACCATTTTAAACCCTATA
Mdfrt3110m05.y1 Mdfrt Malus domestica cDNA clone Mdfrt3110m05 5' similar to TR:O04060 O04060 LONGEST ORF, mRNA sequence.
CV657332.1:7-29
CGTGAC7GAGATTTCCTCCCTCCCTCTTCTCCCACCCCTCGTACCATTTTAAACCCTATA
TSA: Pyrus pyrifolia mRNA, contig: contig_36619.
FX424165.1:68-90
AATGTAGAAACAGTCCTCGCACCATGTGAC68GAGATTTCCTCCCTCCCTCTTCTCCCACCCCTCGTACCATTTT
Malus hybrid cultivar cultivar SH6 chromosome 9.
CP143366.1:28596270-28596292
AATGTAGAAACAGTCCTCGCATCACGTGAC28596270GAGATTTCCTCCCTCCCTCTTCTCCCACCCCTCGTACCATTTTAAACCCTATA
Malus hybrid cultivar cultivar SH6 chromosome 9.
CP143383.1:27185433-27185455
AATGTAGAAACAGTCCTCGCATCACGTGAC27185433GAGATTTCCTCCCTCCCTCTTCTCCCACCCCTCGTACCATTTTAAACCCTATA
Malus sylvestris genome assembly, chromosome: 9.
OU696511.1:28099547-28099569
AATGTAGAAACAGTCCTCGCATCACGTGAC28099547GAGATTTCCTCCCTCCCTCTTCTCCCACCCCTCGTACCATTTTAAACCCTATA
Malus domestica genome assembly, chromosome: 9.
OU696685.1:29069110-29069132
AATGTAGAAACAGTCCTCGCATCACGTGAC29069110GAGATTTCCTCCCTCCCTCTTCTCCCACCCCTCGTACCATTTTAAACCCTATA
Malus domestica genome assembly, chromosome: 9.
OU744550.1:29250750-29250772
AATGTAGAAACAGTCCTCGCATCACGTGAC29250750GAGATTTCCTCCCTCCCTCTTCTCCCACCCCTCGTACCATTTTAAACCCTATA
Malus domestica genome assembly, chromosome: 9.
OU744961.1:28935224-28935246
AATGTAGAAACAGTCCTCGCATCACGTGAC28935224GAGATTTCCTCCCTCCCTCTTCTCCCACCCCTCGTACCATTTTAAACCCTATA
Malus domestica genome assembly, chromosome: 9.
OU744999.1:28723864-28723886
AATGTAGAAACAGTCCTCGCATCACGTGAC28723864GAGATTTCCTCCCTCCCTCTTCTCCCACCCCTCGTACCATTTTAAACCCTATA
Malus x robusta genome assembly, chromosome: 8.
OY720332.1:28619410-28619432
AATGTAGAAACAGTCCTCGCATCACGTGAC28619410GAGATTTCCTCCCTCCCTCTTCTCCCACCCCTCGTACCATTTTAAACCCTATA
Pyrus communis genome assembly, chromosome: 7.
OY757074.1:23588932-23588954
AATGTAGAAACAGTCCTCGCACCATGTGAC23588932GAGATTTCCTCCCTCCCTCTTCTCCCACCCCCCGTACCATTTTAAACCCTATA
Malus hybrid cultivar cultivar Flame chromosome 9.
CP141918.1:7038378-7038400
TATAGGGTTTAAAATGGTACGAGGGGTGGG7038378AGAAGAGGGAGGGAGGAAATCTCGTCACGTGATGCGAGGACTGTTTCTACATT
Malus hybrid cultivar cultivar Flame chromosome 9.
CP141935.1:6865073-6865095
TATAGGGTTTAAAATGGTACGAGGGGTGGG6865073AGAAGAGGGAGGGAGGAAATCTCGTCACGTGATGCGAGGACTGTTTCTACATT
Malus hybrid cultivar cultivar Royalty chromosome 6.
CP141958.1:6917933-6917955
TATAGGGTTTAAAATGGTACGAGGGGTGGG6917933AGAAGAGGGAGGGAGGAAATCTCGTCACGTGATGCGAGGACTGTTTCTACATT
Malus hybrid cultivar cultivar Royalty chromosome 6.
CP141975.1:7168940-7168962
TATAGGGTTTAAAATGGTACGAGGGGTGGG7168940AGAAGAGGGAGGGAGGAAATCTCGTCACGTGATGCGAGGACTGTTTCTACATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAGATTTCCTCCCTCCCTCTTCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGATTTCCTCCCTCCCTCTTCT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.401 | 0.392 | search_plus_done; http://172.18.8.135:50400/match?q=GAGATTTCCTCCCTCCCTCTTCT&k=0&no_gap=0&offset=0&limit=50
0.439 | 0.038 | search_minus_done; http://172.18.8.135:50400/match?q=AGAAGAGGGAGGGAGGAAATCTC&k=0&no_gap=0&offset=0&limit=36
0.442 | 0.003 | cgi_end;

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