GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 01:49:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pyrrhosoma nymphula genome assembly, chromosome: 7.
OY754334.1:87247841-87247860
TCTAGTGCGCAGGGACTGAAACTTAATGGA87247841GAGCAAGTGCGTTGTTGTGTTGGGAGCCTGTCGGTAGGTAGCATTTTTAA
UCRCR01_06B10_r Clementine Mandarin Albedo at Rind Separation cDNA Library Citrus reticulata cDNA clone CR_CEa06B10, mRNA sequence.
CF831297.1:216-235
TCGGGCGGACTCTCCAACGCTATAACCGAA216ACACAACAACGCACTTGCTCTCTCGCTCATTTTTCAAATACGCAGCGCTT
IC0AAA75AF12RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY290355.1:317-336
TCGGGCGGACTCTCCAACGCTATAACCGAA317ACACAACAACGCACTTGCTCTCTCGCTCATTTTTCAAATACGCAGCGCTT
CS00-C3-700-061-F08-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
EY697565.1:104-123
TCGGGCGGACTCTCCAACGCTATAACCGAA104ACACAACAACGCACTTGCTCTCTCGCTCATTTTTCAAATACGCAGCGCTT
CR05-C1-103-003-B02-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus reticulata cDNA, mRNA sequence.
EY775351.1:188-207
TCGGGCGGACTCTCCAACGCTATAACCGAA188ACACAACAACGCACTTGCTCTCTCGCTCATTTTTCAAATACGCAGCGCTT
CG32-C1-003-024-C04-CT.F Mexican lime leaf, greenhouse plant Citrus aurantiifolia cDNA, mRNA sequence.
EY852606.1:270-289
TCGGGCGGACTCTCCAACGCTATAACCGAA270ACACAACAACGCACTTGCTCTCTCGCTCATTTTCAAATACGCAGCGCTTT
IC0AAA75AF12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA75AF12, mRNA sequence.
FC885414.1:317-336
TCGGGCGGACTCTCCAACGCTATAACCGAA317ACACAACAACGCACTTGCTCTCTCGCTCATTTTTCAAATACGCAGCGCTT
Vigna unguiculata cultivar Xiabao 2 chromosome Vu02.
CP039348.1:36441434-36441453
TATATATAGCATAGAACGTTGTAATCACAC36441434ACACAACAACGCACTTGCTCACCCAGAGACAAAAGTCTCCTACTGAGAGT
Vigna unguiculata cultivar Xiabao 2 chromosome Vu02.
CP039348.1:36443209-36443228
TATATATAGCATAGAACGTTGTAATCACAC36443209ACACAACAACGCACTTGCTCACCCAGAGACAAAAGTCTCCTACTGAGAGT
Citrus sinensis genome assembly, chromosome: 1.
OY754318.1:14731614-14731633
TCGGGCGGACTCTCCAACGCTATAACCGAA14731614ACACAACAACGCACTTGCTCTCTCGCTCATTTTTCAAATACGCAGCGCTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAGCAAGTGCGTTGTTGTGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGCAAGTGCGTTGTTGTGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.089 | 0.080 | search_plus_done; http://172.18.8.135:50400/match?q=GAGCAAGTGCGTTGTTGTGT&k=0&no_gap=0&offset=0&limit=50
0.560 | 0.471 | search_minus_done; http://172.18.8.135:50400/match?q=ACACAACAACGCACTTGCTC&k=0&no_gap=0&offset=0&limit=49
0.566 | 0.006 | cgi_end;

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