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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-09 19:48:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Seq_sg_23-M02.f MAMB Musa acuminata subsp. malaccensis genomic, genomic survey sequence.
HN251310.1:304-323
CTTCTCCCTTAATCTCGTACTCCGACAGGA304GAGCGCTTAGGCTTCTCTCAGACAACGCCTCTTATCCTCTTTCTTCCTTC
Musa acuminata subsp. malaccensis isolate AA chromosome 7.
CP126376.1:36135563-36135582
CGTCTCCCTTAATCTCGAACTCCGACAGGA36135563GAGCGCTTAGGCTTCTCTCAGACAACGCCTCTTATCCTCCTTCTTCCTTC
Musa acuminata subsp. malaccensis isolate AA chromosome 18.
CP126387.1:35992284-35992303
CGTCTCCCTTAATCTCGAACTCCGACAGGA35992284GAGCGCTTAGGCTTCTCTCAGACAACGCCTCTTATCCTCCTTCTTCCTTC
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A07.
HG996473.1:37155429-37155448
CTTCTCCCTTAATCTCGTACTCCGACAGGA37155429GAGCGCTTAGGCTTCTCTCAGACAACGCCTCTTATCCTCTTTCTTCCTTC
Musa schizocarpa genome assembly, chromosome: S07.
LS990920.1:40924812-40924831
CGCCTCCCTTGATCTCGTACTCCGACAGGA40924812GAGCGCTTAGGCTTCTCTCAGACAACGCCTCTTATCCTCTTTCTTCCTTC
TSA: Musa acuminata AAA Group Unigene8588_NK1 mRNA sequence.
JV446376.1:283-302
GAAGGAAGAAAGAGGATAAGAGGCGTTGTC283TGAGAGAAGCCTAAGCGCTCTCTTCTCCTTCATCAGCCACATGTTGCGGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAGCGCTTAGGCTTCTCTCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGCGCTTAGGCTTCTCTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.142 | 0.134 | search_plus_done; http://172.18.8.135:50400/match?q=GAGCGCTTAGGCTTCTCTCA&k=0&no_gap=0&offset=0&limit=50
0.182 | 0.039 | search_minus_done; http://172.18.8.135:50400/match?q=TGAGAGAAGCCTAAGCGCTC&k=0&no_gap=0&offset=0&limit=45
0.182 | 0.001 | cgi_end;

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