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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:41:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

UCRCS09_8E08_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-8E08-I15-1-5.g, mRNA sequence.
CX053834.1:519-538
GCAACGACTGCTCATGAGATTTATGACTCC519GAGCTCAAAACAATAGCCGCTAGCTTCCTTCGCGGCTTTGCCACCGAACA
IC0AAA22CC06RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY267839.1:545-564
GCAACGACTGCTCATGAGATTTATGACTCC545GAGCTCAAAACAATAGCCGCTAGCTTCCTTCGCGGCTTTGCCACCGAACA
IC0AAA39DE01RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY275609.1:524-543
GCAACGACTGCTCATGAGATTTATGACTCC524GAGCTCAAAACAATAGCCGCTAGCTTCCTTCGCGGCTTTGCCACCGAACA
IC0AAA41BF12RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY276534.1:210-229
GCAACGACTGCTCATGATATTTATGACTCC210GAGCTCAAAACAATAGCCGCTAGCTTCCTTCGCGGCTTTGCCACCGAACA
IC0AAA78BH08RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY291553.1:527-546
GCAACGACTGCTCATGATATTTATGACTCC527GAGCTCAAAACAATAGCCGCTAGCTTCCTTCGCGGCTTTGCCACCGAACA
CS00-C3-700-028-H07-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
EY694746.1:401-420
GCAACGACTGCTCATGATATTTATGACTCC401GAGCTCAAAACAATAGCCGCTAGCTTCCTTCGCGGCTTTGCCACCGAACA
CS00-C3-705-078-D12-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
EY740916.1:461-480
GCAACGACTGCTCATGAGATTTATGACTCC461GAGCTCAAAACAATAGCCGCTAGCTTCCTTCGCGGCTTTGCCACCGAACA
IC0AAA78BH08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78BH08, mRNA sequence.
FC883898.1:527-546
GCAACGACTGCTCATGATATTTATGACTCC527GAGCTCAAAACAATAGCCGCTAGCTTCCTTCGCGGCTTTGCCACCGAACA
IC0AAA41BF12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA41BF12, mRNA sequence.
FC887503.1:210-229
GCAACGACTGCTCATGATATTTATGACTCC210GAGCTCAAAACAATAGCCGCTAGCTTCCTTCGCGGCTTTGCCACCGAACA
IC0AAA39DE01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA39DE01, mRNA sequence.
FC907326.1:524-543
GCAACGACTGCTCATGAGATTTATGACTCC524GAGCTCAAAACAATAGCCGCTAGCTTCCTTCGCGGCTTTGCCACCGAACA
IC0AAA22CC06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22CC06, mRNA sequence.
FC910645.1:545-564
GCAACGACTGCTCATGAGATTTATGACTCC545GAGCTCAAAACAATAGCCGCTAGCTTCCTTCGCGGCTTTGCCACCGAACA
1095516069042 Global-Ocean-Sampling_GS-32-01-01-1P3-1P6KB marine metagenome genomic clone 1061005977598 3', genomic survey sequence.
EK542774.1:836-855
AAATTCAAGTGCCTGGCTGAAGAGACCGTT836GAGCTCAAAACAATAGCCGCCGCGCGCCGCAACGATGAGCTTTCTGTGCA
Khaya senegalensis isolate HCNGB_00002341 chromosome 7.
CP135556.1:3897673-3897692
TCGACTAACACTCACGAGATTTATGACTCA3897673GAGCTCAAAACAATAGCCGCCAGCTTCCTTCGCGGTTTCTCCACCGAACA
Swietenia macrophylla isolate HCNGB_00002344 chromosome 11.
CP135561.1:7947101-7947120
TCTGCTAATACTCACGAGATTTACGACTCA7947101GAGCTCAAAACAATAGCCGCCAGCTTCCTTCGCGGTTTTTCCACAGAACA
Citrus sinensis genome assembly, chromosome: 7.
OY754324.1:1790481-1790500
GCAACGACTGCTCATGAGATTTATGACTCC1790481GAGCTCAAAACAATAGCCGCTAGCTTCCTTCGCGGCTTTGCCACCGAACA
1095521008195 Global-Ocean-Sampling_GS-32-01-01-1P3-1P6KB marine metagenome genomic clone 1061005977598 5', genomic survey sequence.
EK561498.1:372-391
TGCACAGAAAGCTCATCGTTGCGGCGCGCG372GCGGCTATTGTTTTGAGCTCAACGGTCTCTTCAGCCAGGCACTTGAATTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAGCTCAAAACAATAGCCGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGCTCAAAACAATAGCCGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.861 | 0.852 | search_plus_done; http://172.18.8.135:50400/match?q=GAGCTCAAAACAATAGCCGC&k=0&no_gap=0&offset=0&limit=50
0.995 | 0.135 | search_minus_done; http://172.18.8.135:50400/match?q=GCGGCTATTGTTTTGAGCTC&k=0&no_gap=0&offset=0&limit=35
0.996 | 0.001 | cgi_end;

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