GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:44:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BR036876 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-109B02 5', mRNA sequence.
EX052232.1:584-603
CTGATCTGTGCATTACAAAAAAGACATAAA584GAGCTCTCTTAAGCCCTTGTGCCAACCATGTAATCTATCTATATCTCTTG
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:2576832-2576851
CTGATCTGTGCATTACAAAAAAGACATAAA2576832GAGCTCTCTTAAGCCCTTGTGCCAACCATGTAATCTATCTATATCTCTTG
Brassica napus genome assembly, chromosome: A03.
HG994357.1:2537024-2537043
CTGATCTGTGCATTACAAAAAAGACATAAA2537024GAGCTCTCTTAAGCCCTTGTGCCAACCATGTAATCTATCTATATCTCTTG
Brassica rapa genome, scaffold: A03.
LR031572.1:2498565-2498584
CTGATCTGTGCATTACAAAAAAGACATAAA2498565GAGCTCTCTTAAGCCCTTGTGCCAACCATGTAATCTATCTATATCTCTTG
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:2499362-2499381
CTGATCTGTGCATTACAAAAAAGACATAAA2499362GAGCTCTCTTAAGCCCTTGTGCCAACCATGTAATCTATCTATATCTCTTG
65JKBNM0_T3_006_H09_16MAR2005_065 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL587221.1:178-197
CAAGAGATATAGATAGATTACATGGTTGGC178ACAAGGGCTTAAGAGAGCTCTTTATGTCTTTTTTGTAATGCACAGATCAG
0079874 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV156012.1:211-230
CAAGAGATATAGATAGATTACATGGTTGGC211ACAAGGGCTTAAGAGAGCTCTTTATGTCTTTTTTGTAATGCACAGATCAG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_8722.
FX691815.1:50-69
CAAGAGATATAGATAGATTACATGGTTGGC50ACAAGGGCTTAAGAGAGCTCTTTATGTCTTTTTTGTAATGCACAGATCAG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_15133.
FX726419.1:41-60
CAAGAGATATAGATAGATTACATGGTTGGC41ACAAGGGCTTAAGAGAGCTCTTTATGTCTTTTTTGTAATGCACAGATCAG
Brassica napus GSS, clone JBnB005A14, end read, primer SACL2(forward).
CU984619.1:363-382
CAAGAGATATAGATAGATTACATGGTTGGC363ACAAGGGCTTAAGAGAGCTCTTTATGTCTTTTTTGTAATGCACAGATCAG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB008I08, complete sequence.
AC189212.2:107248-107267
CAAGAGATATAGATAGATTACATGGTTGGC107248ACAAGGGCTTAAGAGAGCTCTTTATGTCTTTTTTGTAATGCACAGATCAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAGCTCTCTTAAGCCCTTGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGCTCTCTTAAGCCCTTGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.384 | 0.376 | search_plus_done; http://172.18.8.135:50400/match?q=GAGCTCTCTTAAGCCCTTGT&k=0&no_gap=0&offset=0&limit=50
0.615 | 0.230 | search_minus_done; http://172.18.8.135:50400/match?q=ACAAGGGCTTAAGAGAGCTC&k=0&no_gap=0&offset=0&limit=45
0.618 | 0.004 | cgi_end;

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