GGGenome | Results

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2025-04-06 04:22:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Sequence 5486 from patent US 7557201.
GP474489.1:207-226

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA207GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

Sequence 13994 from patent US 7557201.
GP482997.1:80-99

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA80GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

Sequence 17301 from patent US 7557201.
GP486304.1:225-244

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA225GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

Sequence 22536 from patent US 7557201.
GP491539.1:201-220

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA201GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

Sequence 23311 from patent US 7557201.
GP492314.1:211-230

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA211GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

Sequence 3546 from patent US 9976157.
MI669540.1:363-382

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA363GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

Sequence 3556 from patent US 9976157.
MI669550.1:273-292

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA273GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

Sequence 3546 from patent US 10501750.
MO571024.1:363-382

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA363GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

Sequence 3556 from patent US 10501750.
MO571034.1:273-292

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA273GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

Sequence 1613 from patent US 10858403.
MX113083.1:232-251

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA232GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

Sequence 3546 from patent US 11293032.
OO007737.1:363-382

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA363GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

Sequence 3556 from patent US 11293032.
OO007747.1:273-292

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA273GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

Sequence 1613 from patent US 11421004.
OO462446.1:232-251

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA232GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

Sequence 1613 from patent US 11472853.
OO764566.1:232-251

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA232GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

Sequence 1613 from patent US 11485761.
OO823724.1:232-251

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA232GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

BNLGHi5506 Six-day Cotton fiber Gossypium hirsutum cDNA 5', mRNA sequence.
AW187456.1:17-36

AGAGAAGGCCCTTAGA17GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GA__Ea0034H19f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0034H19f, mRNA sequence.
BE054152.2:196-215

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA196GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GA__Eb0018B09f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0018B09f, mRNA sequence.
BF273459.1:200-219

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA200GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GA__Eb0021D05f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0021D05f, mRNA sequence.
BF274496.1:200-219

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA200GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGGTAGGGTGTCCT

GA__Eb0022A12f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0022A12f, mRNA sequence.
BF274781.2:23-42

AGAAGAAGAGAAGGCCCTTTTA23GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGGCT

GA__Eb0022O12f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0022O12f, mRNA sequence.
BF275027.1:192-211

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA192GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GA__Eb0026I16f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0026I16f, mRNA sequence.
BF277099.2:207-226

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA207GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GA__Eb0032A12f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0032A12f, mRNA sequence.
BF278183.2:197-216

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA197GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GA__Eb0036K20f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0036K20f, mRNA sequence.
BF279017.1:154-173

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA154GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GA__Ea0011E13f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0011E13f, mRNA sequence.
BG440996.1:215-234

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA215GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GA__Ea0021D22f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0021D22f, mRNA sequence.
BG443589.1:216-235

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA216GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GA__Ea0023O09f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0023O09f, mRNA sequence.
BG444292.1:173-192

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA173GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GA__Eb0039K20f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0039K20f, mRNA sequence.
BG446883.1:197-216

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA197GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GA__Eb0040D12f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0040D12f, mRNA sequence.
BG447018.1:210-229

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA210GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GA__Eb0040J16f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0040J16f, mRNA sequence.
BG447106.1:145-164

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA145GAGCTGAGAGCAAAGGCATCACANAAGGGATCATTTGGTGGTTCTGGTCT

GA__Eb0040J18f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0040J18f, mRNA sequence.
BG447107.1:96-115

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA96GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GA__Eb0040L24f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0040L24f, mRNA sequence.
BG447142.1:96-115

AAAACGAAAGAGGAAGAGATGGCCCTTAGA96GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GA__Eb0040P14f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0040P14f, mRNA sequence.
BG447190.1:96-115

AAAAAGAAAGATGTATAGATGGCCCTTAGA96GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GA__Ea0023O09r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0023O09r, mRNA sequence.
BM359808.1:173-192

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA173GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GA__Ea0034H04r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0034H04r, mRNA sequence.
BM360736.1:210-229

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA210GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GA__Ed0088D05f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0088D05f, mRNA sequence.
BQ405907.1:219-238

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA219GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GA__Ed0101E08f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0101E08f, mRNA sequence.
BQ406987.1:128-147

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA128GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GA__Ed0036H06f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0036H06f, mRNA sequence.
BQ411131.1:207-226

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA207GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GR__Ea18D03.r GR__Ea Gossypium raimondii cDNA clone GR__Ea18D03 3', mRNA sequence.
CO095515.1:223-242

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA223GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GR__Ea18D04.r GR__Ea Gossypium raimondii cDNA clone GR__Ea18D04 3', mRNA sequence.
CO095517.1:222-241

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA222GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

G.hir-15-20 DAA bolls drought stressed 779 15-20 DAA bolls from drought stressed plants Gossypium hirsutum cDNA, mRNA sequence.
DN801624.1:154-173

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA154GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

CM036C03 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR455627.1:224-243

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA224GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GH_ON14A11.f GH_ON Gossypium hirsutum cDNA clone GH_ON14A11 5', mRNA sequence.
DT456296.1:179-198

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA179GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GH_ON15B11.f GH_ON Gossypium hirsutum cDNA clone GH_ON15B11 5', mRNA sequence.
DT456386.1:212-231

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA212GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GH_ON34D03.r GH_ON Gossypium hirsutum cDNA clone GH_ON34D03 3', mRNA sequence.
DT457197.1:224-243

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA224GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GH_CHX20K16.r GH_CHX Gossypium hirsutum cDNA clone GH_CHX20K16 3', mRNA sequence.
DT467601.1:220-239

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA220GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GH_RTFR_10R_B12_InvR_13Sep04_094_F Root (free) - 7-10 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW233758.1:233-252

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA233GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GH_TMIRS_049_G02_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW500758.1:232-251

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA232GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GH_TMIRS_104_B10_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW506466.1:45-64

AAAAAGAAAGAGGAAGAGAAGGCCCTTAGA45GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GH_TMIRS_115_C09_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW507540.1:170-189

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA170GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GH_TMIRS_228_D06_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW519196.1:45-64

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA45GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

GH_TMIRS_242_D06_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW520622.1:45-64

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA45GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

EST216 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 4-a3 5', mRNA sequence.
EE592614.1:201-220

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA201GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

UFL_508_39 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES795323.1:205-224

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA205GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

UFL_538_01 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES800293.1:116-135

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA116GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

UFL_603_79 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES805615.1:205-224

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA205GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

UFL_161_29 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES814107.1:139-158

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA139GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

UFL_246_03 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES823448.1:258-277

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA258GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

UFL_391_29 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES830799.1:204-223

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA204GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

UFL_447_29 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES832275.1:194-213

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA194GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

UFL_015_03 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES835975.1:211-230

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA211GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

UFL_016_38 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES836100.1:96-115

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA96GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

UFL_017_84 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES836236.1:104-123

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA104GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

UFL_020_77 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES836497.1:111-130

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA111GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

UFL_133_72 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES846472.1:208-227

AAAAAGAAAGAAGAAGAGAAGGCCCTTAGA208GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

Gossypium turneri isolate D10-2 chromosome D10_09.
CP032579.1:17055979-17055998

ATTTTTCTTTTTGATGTGCAGGCCCTTAGA17055979GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

Gossypium herbaceum isolate Zhongcao1 chromosome 9.
CP106695.1:10548849-10548868

ATTTTTCTTTTTGATGTGTAGGCCCTTAGA10548849GAGCTGAGAGCAAAGGCATCACAAAAGGGATCATTTGGTGGTTCTGGTCT

Data Export:

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Debug Info:

0.008 | 0.008 | search_start;
3.193 | 3.184 | search_plus_done; http://172.18.8.135:50400/match?q=GAGCTGAGAGCAAAGGCATC&k=0&no_gap=0&offset=0&limit=50
3.269 | 0.076 | search_minus_done; http://172.18.8.135:50400/match?q=GATGCCTTTGCTCTCAGCTC&k=0&no_gap=0&offset=0&limit=0
3.269 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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