GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 07:20:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 2053 from patent US 10760088.
MV631792.1:872-891
TAGGATTTTACTGCTTTATGAACAAATTCA872GAGGAAATATTCCTGCATCATTTTCCAATGCTTCTAGATTTCAATTGCTT
Sequence 2053 from patent US 11111499.
MY423675.1:872-891
TAGGATTTTACTGCTTTATGAACAAATTCA872GAGGAAATATTCCTGCATCATTTTCCAATGCTTCTAGATTTCAATTGCTT
Pm_2736 Fruits and flowers of Prunus mume cv. Xiyeqing Prunus mume cDNA, mRNA sequence.
GW871310.1:17-36
GCGGGGCTGGAAAGAA17GAGGAAATATTCCTGCATCATTGATTAGAATTAGTTTGAGGAGAAGGAGA
Prunus dulcis DNA, pseudomolecule Pd06.
AP019302.1:5833786-5833805
AATTTTGATCTGGGTTTTTGCTGGAAAGAA5833786GAGGAAATATTCCTGCATCATTGATTAGAATTAGTTTGAGGAGAAGGAGA
Prunus mume strain xianmimei clone P23 SSR marker genomic sequence.
GU458024.1:1-20
1GAGGAAATATTCCTGCATCATTGATTAGAATTAGTTTGAGGAGAAGGAGA
Malus domestica genome assembly, chromosome: 4.
OU696680.1:21895459-21895478
TAGGATTTTACTGCTTTATGAACAAATTCA21895459GAGGAAATATTCCTGCATCATTTTCCAATGCTTCTAGATTTCAATTGCTT
Malus x robusta genome assembly, chromosome: 17.
OY720341.1:7551967-7551986
TAGGATTTTACTGCTTTATGAACAAATTCA7551967GAGGAAATATTCCTGCATCATTTTCCAATGCTTCTAGATTTCAATTGCTT
Schistosoma spindale genome assembly, chromosome: 6.
OX336421.1:12142199-12142218
ATTCCTATATACACCAAAGGACAAAAAGTA12142199GAGGAAATATTCCTGCATCATGGGGAGACAGTACTGCCGCATCATCAGTG
Luidia sarsii genome assembly, chromosome: 21.
OX465121.1:9073619-9073638
GACCGAATAATTATTGAACCATGGATGATG9073619GAGGAAATATTCCTGCATCATGCATGATTGAACTGACAGCCTGGCTCTCA
Malus hybrid cultivar cultivar Flame chromosome 4.
CP141913.1:22657379-22657398
AAGCAATTGAAATCTAGAAGCATTGGAAAA22657379TGATGCAGGAATATTTCCTCTGAATTTGTTCATAAAGCAGTAAAATCCTA
Malus hybrid cultivar cultivar Flame chromosome 4.
CP141930.1:23596325-23596344
AAGCAATTGAAATCTAGAAGCATTGGAAAA23596325TGATGCAGGAATATTTCCTCTGAATTTGTTCATAAAGCAGTAAAATCCTA
Malus hybrid cultivar cultivar Royalty chromosome 4.
CP141956.1:22557261-22557280
AAGCAATTGAAATCTAGAAGCATTGGAAAA22557261TGATGCAGGAATATTTCCTCTGAATTTGTTCATAAAGCAGTAAAATCCTA
Malus hybrid cultivar cultivar Royalty chromosome 4.
CP141973.1:21886926-21886945
AAGCAATTGAAATCTAGAAGCATTGGAAAA21886926TGATGCAGGAATATTTCCTCTGAATTTGTTCATAAAGCAGTAAAATCCTA
Malus hybrid cultivar cultivar SH6 chromosome 4.
CP143361.1:23047501-23047520
AAGCAATTGAAATCTAGAAGCATTGGAAAA23047501TGATGCAGGAATATTTCCTCTGAATTTGTTCATAAAGCAGTAAAATCCTA
Prunus mume strain taoxingmei clone P24 SSR marker genomic sequence.
GU458025.1:166-185
TCTCCTTCTCCTCAAACTAATTCTAATCAA166TGATGCAGGAATATTTCCTC
Malus sylvestris genome assembly, chromosome: 4.
OU696506.1:23055980-23055999
AAGCAATTGAAATCTAGAAGCATTGGAAAA23055980TGATGCAGGAATATTTCCTCTGAATTTGTTCATAAAGCAGTAAAATCCTA
Malus domestica genome assembly, chromosome: 4.
OU744545.1:23313737-23313756
AAGCAATTGAAATCTAGAAGCATTGGAAAA23313737TGATGCAGGAATATTTCCTCTGAATTTGTTCATAAAGCAGTAAAATCCTA
Malus domestica genome assembly, chromosome: 4.
OU744956.1:23542506-23542525
AAGCAATTGAAATCTAGAAGCATTGGAAAA23542506TGATGCAGGAATATTTCCTCTGAATTTGTTCATAAAGCAGTAAAATCCTA
Malus domestica genome assembly, chromosome: 4.
OU744956.1:23579581-23579600
AAGCAATTGAAATCTAGAAGCATTGGAAAA23579581TGATGCAGGAATATTTCCTCTGAATTTGTTCATAAAGCAGTAAAATCCTA
Malus domestica genome assembly, chromosome: 4.
OU744994.1:23378213-23378232
AAGCAATTGAAATCTAGAAGCATTGGAAAA23378213TGATGCAGGAATATTTCCTCTGAATTTGTTCATAAAGCAGTAAAATCCTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAGGAAATATTCCTGCATCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGGAAATATTCCTGCATCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.368 | 0.359 | search_plus_done; http://172.18.8.135:50400/match?q=GAGGAAATATTCCTGCATCA&k=0&no_gap=0&offset=0&limit=50
0.408 | 0.040 | search_minus_done; http://172.18.8.135:50400/match?q=TGATGCAGGAATATTTCCTC&k=0&no_gap=0&offset=0&limit=41
0.415 | 0.007 | cgi_end;

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