GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 23:22:14, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Homo sapiens DNA, chromosome 8, nearly complete genome.
AP023468.1:119370860-119370879
TTCTCTCAGCATGGAAGCTGGATTCTGAGA119370860GAGGAAGTCCAAGAAGCGTGTCCAAGAGCAAGGGTTCCAATAGACCTGTT
Homo sapiens isolate CHM13 chromosome 8.
CP061028.1:123697273-123697292
TTCTCTCAGCATGGAAGCTGGATTCTGAGA123697273GAGGAAGTCCAAGAAGCGTGTCCAAGAGCAAGGGTTCCAATAGACCTGTT
Homo sapiens isolate CHM13 chromosome 8.
CP068270.2:123697029-123697048
TTCTCTCAGCATGGAAGCTGGATTCTGAGA123697029GAGGAAGTCCAAGAAGCGTGTCCAAGAGCAAGGGTTCCAATAGACCTGTT
Homo sapiens isolate NA24385 chromosome 8.
CP139513.1:124177763-124177782
TTCTCTCAGCATGGAAGCTGGATTCTGAGA124177763GAGGAAGTCCAAGAAGCGTGTCCAAGAGCAAGGGTTCCAATAGACCTGTT
Homo sapiens isolate NA24385 chromosome 8.
CP139536.1:124234210-124234229
TTCTCTCAGCATGGAAGCTGGATTCTGAGA124234210GAGGAAGTCCAAGAAGCGTGTCCAAGAGCAAGGGTTCCAATAGACCTGTT
Eukaryotic synthetic construct chromosome 8.
CP034507.1:123568487-123568506
TTCTCTCAGCATGGAAGCTGGATTCTGAGA123568487GAGGAAGTCCAAGAAGCGTGTCCAAGAGCAAGGGTTCCAATAGACTTGTT
Eukaryotic synthetic construct chromosome 8.
CP034532.1:123568487-123568506
TTCTCTCAGCATGGAAGCTGGATTCTGAGA123568487GAGGAAGTCCAAGAAGCGTGTCCAAGAGCAAGGGTTCCAATAGACTTGTT
Homo sapiens chromosome 8 clone RP11-973F15 map 8, WORKING DRAFT SEQUENCE, 13 ordered pieces.
AC124790.1:107582-107601
TTCTCTCAGCATGGAAGCTGGATTCTGAGA107582GAGGAAGTCCAAGAAGCGTGTCCAAGAGCAAGGGTTCCAATAGACCTGTT
Homo sapiens chromosome 8 clone RP11-973F15 map 8, WORKING DRAFT SEQUENCE, 22 ordered pieces.
AC124791.1:16631-16650
TTCTCTCAGCATGGAAGCTGGATTCTGAGA16631GAGGAAGTCCAAGAAGCGTGTCCAAGAGCAAGGGTTCCAATAGACCTGTT
Eristalis pertinax genome assembly, chromosome: 1.
OU026145.1:59315312-59315331
GCCTGCATACTGCCACTTGGTCAATTGTCC59315312GAGGAAGTCCAAGAAGCGTGCAATAAGGAATACAAACGATTTCGAGAGCA
Chalcosyrphus nemorum genome assembly, chromosome: 3.
OX454334.1:15798515-15798534
ACCGCCCGCACATAAGTGGGAATCCCCACG15798515GAGGAAGTCCAAGAAGCGTGTTCATTTTATGGACGAGGTGAGAGCATACA
Homo sapiens chromosome 8, clone RP11-973F15, complete sequence.
AC100872.2:180717-180736
AACAGGTCTATTGGAACCCTTGCTCTTGGA180717CACGCTTCTTGGACTTCCTCTCTCAGAATCCAGCTTCCATGCTGAGAGAA
Homo sapiens chromosome 8, clone RP11-96B2, complete sequence.
AC108136.14:50310-50329
AACAAGTCTATTGGAACCCTTGCTCTTGGA50310CACGCTTCTTGGACTTCCTCTCTCAGAATCCAGCTTCCATGCTGAGAGAA
Homo sapiens chromosome 2 clone RP11-591H15 map 2, WORKING DRAFT SEQUENCE, 3 unordered pieces.
AC069493.3:31115-31134
AACAGGTCTATTGGAACCCTTGCTCTTGGA31115CACGCTTCTTGGACTTCCTCTCTCAGAATCCAGCTTCCATGCTGAGAGAA
Homo sapiens chromosome 8 clone RP11-96B2 map 8q, WORKING DRAFT SEQUENCE, 5 unordered pieces.
AF301238.2:53586-53605
ACAAGTCTATTGGAAACCCTTGCTCTTGGA53586CACGCTTCTTGGACTTCCTCTCTCAGAATCCAGCTTCCATGCTGAGAGAA
Globia sparganii genome assembly, chromosome: 12.
OX438664.1:4972889-4972908
TACCTTTTTTTTTGGTGCGCTGTGGAAGCA4972889CACGCTTCTTGGACTTCCTCCATGGTGGGGATGACAGAGGGGCATGCCGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAGGAAGTCCAAGAAGCGTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGGAAGTCCAAGAAGCGTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.108 | 0.100 | search_plus_done; http://172.18.8.135:50400/match?q=GAGGAAGTCCAAGAAGCGTG&k=0&no_gap=0&offset=0&limit=50
0.130 | 0.022 | search_minus_done; http://172.18.8.135:50400/match?q=CACGCTTCTTGGACTTCCTC&k=0&no_gap=0&offset=0&limit=39
0.134 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).