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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-08 15:34:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Apodemus sylvaticus genome assembly, chromosome: 7.
OX359304.1:14823255-14823274
CCCATTCCAGGATGGAGCTCCCAGATTTCA14823255GAGGAGGGAAATTGGAGAAGTCAGGAGTGGAGGCTTGGGGGAAATGGAGG
Rhinatrema bivittatum genome assembly, chromosome: 1.
LR584387.1:100647663-100647682
AGGATGATTCCCTGGTAGGATGGTACATGG100647663GAGGAGGGAAATTGGAGAAGGCCATTTTTTATTCAGTGGGTTTAGGAGGG
Labrus mixtus genome assembly, chromosome: 3.
OY757286.1:18645152-18645171
GACCAGAGAGGTTGAGGAAAGAAGGATATA18645152GAGGAGGGAAATTGGAGAAGTGGTCACTGGGGTTAGATTGATTTATATGT
PEG003-C-223755-501 Normalized Pedal-Pleural Ganglia Aplysia californica cDNA clone PEG003-C-223755 5', mRNA sequence.
EB238157.1:396-415
TGTCGATCGCTCTTTTGAGCTTGCCTTCCG396GAGGAGGGAAATTGGAGAAGGGGGTGTAGATTCTGAGAGAAGAGAGAAGA
Lotus japonicus B-129 DNA, chromosome 6, complete sequence.
AP022634.1:61532045-61532064
GAGCGTTGAATGGTCTTTTGTGATTGGGAG61532045GAGGAGGGAAATTGGAGAAGAAGAAACAAGGGAGAGGATTGAGAAACAGA
Avena eriantha genome assembly, chromosome: 4C.
OU342743.1:25742123-25742142
AGCACCTCAGGTCTATAGCATCGGAGAGTA25742123GAGGAGGGAAATTGGAGAAGAGAGGAGGCAGGCTCGACGGTCCGCCCTAG
Alisma plantago-aquatica genome assembly, chromosome: 3.
OY856411.1:1344111119-1344111138
AGACAAGTGAGGAGAAAAGTGGTGGGGGAA1344111119GAGGAGGGAAATTGGAGAAGTAATGATATATGGATCATGAGAGAAGTAAA
Parascotia fuliginaria genome assembly, chromosome: 29.
OY720200.1:728331-728350
AAGAAAATACAACCAACTCATGTTGGCTAT728331GAGGAGGGAAATTGGAGAAGGGAATGGAGATCGAGGGAGTAATTGTGTTG
Arvicola amphibius genome assembly, chromosome: 4.
LR862383.1:134328899-134328918
GAGATTATAAAAAAATTTCTACATCCTCCC134328899CTTCTCCAATTTCCCTCCTCTCCCTCCTCTCCCTCCTCCCCCTGCCCCTA
Onychomys arenicola genome assembly, chromosome: 4.
OX460350.1:76070858-76070877
CATTTTCAAAGACCTTTAATGTTAGTTATC76070858CTTCTCCAATTTCCCTCCTCTACCCTGTCCTTCCATTCCTTAATCCACCT
Onychomys leucogaster genome assembly, chromosome: 4.
OX460374.1:75352602-75352621
CATTTTCAAAGACCTTTAATGTTAGTTATC75352602CTTCTCCAATTTCCCTCCTCTACCCTGTCCTTCCATTCCTTAATCCACCT
Onychomys leucogaster genome assembly, chromosome: 4.
OX460421.1:75208284-75208303
CATTTTCAAAGACCTTTAATGTTAGTTATC75208284CTTCTCCAATTTCCCTCCTCTACCCTGTCCTTCCATTCCTTAATCCACCT
Peromyscus eremicus genome assembly, chromosome: 4.
OX460469.1:77859364-77859383
CATTTTCAAAGATCTTCAATGTTAGTTATC77859364CTTCTCCAATTTCCCTCCTCTACCTGTCCTCCCATTTCTTACTCCACTTA
Canis lupus familiaris breed Labrador retriever chromosome 06a.
CP050586.1:64908003-64908022
CAAAACCCTTTGAAAGAGTGCCCATATTCT64908003CTTCTCCAATTTCCCTCCTCCTATTATTTCTTGAAGCTACTCCAATCAGG
Canis lupus familiaris breed Labrador retriever chromosome 06b.
CP050622.1:64139279-64139298
CAAAACCCTTTGAAAGAGTGCCCATATTCT64139279CTTCTCCAATTTCCCTCCTCCTATTATTTCTTGAAGCTACTCCAATCAGG
Canis lupus genome assembly, chromosome: 6.
HG994389.1:61562435-61562454
CAAAACCCTTTGAAAGAGTGCCCATATTCT61562435CTTCTCCAATTTCCCTCCTCCTATTATTTCTTGAAGCTACTCCAATCAGG
Symphodus melops genome assembly, chromosome: 8.
OX393532.1:13358316-13358335
ACATATAAATCACGCTGACCTCAGTGACCA13358316CTTCTCCAATTTCCCTCCTCTTATCCTTCTTTCCCCACCTCTCTGGTCCG
Xyrichtys novacula genome assembly, chromosome: 11.
OY660874.1:13763618-13763637
CTCATGAATCTCATGAATCCTCTCTTATCA13763618CTTCTCCAATTTCCCTCCTCTATCCTCTCTCCCATGTTCTCTGTGCTGCA
Labrus bergylta genome assembly, chromosome: 6.
OZ005714.1:17278768-17278787
ACATATAAATCAATCTAACCTCAGTGACCA17278768CTTCTCCAATTTCCCTCCTCTATATCCTTCTTTCCTCAAACCTCTCGTGT
Lotus japonicus cDNA clone:MWL007c06_r, 5' end.
AV406611.1:168-187
CAATCCTCTCCCTTGTTTCTTCTTCTTCTT168CTTCTCCAATTTCCCTCCTCCTCCCAATCACAAAAGACCATTCAACGCTC
Lotus japonicus cDNA clone:MWL038a12_r, 5' end.
AV408240.1:214-233
CAATCCTCTCCCTTGTTTCTTCTTCTTCTT214CTTCTCCAATTTCCCTCCTCCTCCCAATCACAAAAGACCATTCAACGCTC
Lotus japonicus cDNA clone:MWL057e03_r, 5' end.
AV409430.1:201-220
CAATCCTCTCCCTTGTTTCTTCTTCTTCTT201CTTCTCCAATTTCCCTCCTCCTCCCAATCACAAAAGACCATTCAACGCTC
Lotus japonicus cDNA clone:MWL058f05_r, 5' end.
AV409529.1:148-167
CAATCCTCTCCCTTGTTTCTTCTTCTTCTT148CTTCTCCAATTTCCCTCCTCCTCCCAATCACAAAAGACCATTCAACGCTC
Lotus japonicus cDNA clone:MWM030h10_r, 5' end.
AV423695.1:77-96
CAATCCTCTCCCTGGTTTCTTCTTCTTCTT77CTTCTCCAATTTCCCTCCTCCTCCCAATCACAAAAGACCATTCAACGCTC
Lotus japonicus cDNA clone:MWM057a02_r, 5' end.
AV425646.1:196-215
CAATCCTCTCCCTTGTTTCTTCTTCTTCTT196CTTCTCCAATTTCCCTCCTCCTCCCAATCACAAAAGACCATTCAACGCTC
Lotus japonicus cDNA clone:MWL027d06_f, 3' end.
AV769018.1:167-186
CAATCCTCTCCCTTGTTTCTTCTTCTTCTT167CTTCTCCAATTTCCCTCCTCCTCCCAATCACAAAAGACCATTCAACGCTC
Lotus japonicus cDNA, clone:SPD079h05_f, 3' end.
BP050353.1:191-210
CAATCCTCTCCCTTGTTTCTTCTTCTTCTT191CTTCTCCAATTTCCCTCCTCCTCCCAATCACAAAAGACCATTCAACGCTC
GQ02763.B3_H06 GQ027: Mature Somatic EMBRYOS Picea glauca cDNA clone GQ02763_H06 5', mRNA sequence.
DV995503.2:138-157
ACTGTGTCTACCTCAAGAACCTCGGCAAAG138CTTCTCCAATTTCCCTCCTCCAACTGACTTGCCCATACAGATTTCTGGGT
Lotus japonicus cDNA, clone: LjFL3-011-BG04, 5'-end sequence.
FS321839.1:212-231
CAATCCTCTCCCTTGTTTCTTCTTCTTCTT212CTTCTCCAATTTCCCTCCTCCTCCCAATCACAAAAGACCATTCAACGCTC
Lotus japonicus cDNA, clone: LjFL3-023-AD07, 5'-end sequence.
FS325840.1:151-170
TCTGTTTCTCAATCCTCTCCCTTGTTTCTT151CTTCTCCAATTTCCCTCCTCCTCCCAATCACAAAAGACCATTCAACGCTC
LJNBP13TFB JCVI-LJ3 Lotus japonicus cDNA 5', mRNA sequence.
GO037295.1:154-173
CAATCCTCTCCCTTGTTTCTTCTTCTTCTT154CTTCTCCAATTTCCCTCCTCCTCCCAATCACAAAAGACCATTCAACGCTC
Lotus japonicus genomic DNA, chromosome 6, clone: LjT19B18, TM0139.
AP004960.1:36275-36294
CAATCCTCTCCCTTGTTTCTTCTTCTTCTT36275CTTCTCCAATTTCCCTCCTCCTCCCAATCACAAAAGACCATTCAACGCTC
Lotus japonicus clone JCVI-FLLj-23B3 unknown mRNA.
BT133984.1:154-173
CAATCCTCTCCCTTGTTTCTTCTTCTTCTT154CTTCTCCAATTTCCCTCCTCCTCCCAATCACAAAAGACCATTCAACGCTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAGGAGGGAAATTGGAGAAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGGAGGGAAATTGGAGAAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.173 | 0.164 | search_plus_done; http://172.18.8.135:50400/match?q=GAGGAGGGAAATTGGAGAAG&k=0&no_gap=0&offset=0&limit=50
0.719 | 0.546 | search_minus_done; http://172.18.8.135:50400/match?q=CTTCTCCAATTTCCCTCCTC&k=0&no_gap=0&offset=0&limit=42
0.735 | 0.016 | cgi_end;

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