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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 18:43:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Gouania willdenowi genome assembly, chromosome: 5.
LR131993.1:9661665-9661684
AGCAACTGTTTTTCTCATGAGGACAGCAGC9661665GAGGATCTGACGCGTTTCTCCCGCTGCGCGTCGCTGATCTGTGGGGCTCG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_14034.
FX669875.1:1151-1170
CCGCGGGAGGAGCGGGTGCGGACGTGGGCG1151GAGGATCTGACGCGTTTCTCCCAGGCGGGGCCGCCCCAGGAGGGGGAGGA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_31793.
FX793364.1:1156-1175
CCGCGGGAGGAGCGGGTGCGGACGTGGGCG1156GAGGATCTGACGCGTTTCTCCCAGGCGGGGCCGCCCCAGGAGGGGGAGGA
TSA: Raphanus sativus RS28027 mRNA sequence.
JT812574.1:1213-1232
CCGCGGGAGGAGCGGGTGCGGACGTGGGCG1213GAGGATCTGACGCGTTTCTCCCAGGCGGGGCCGCCCCAGGAGGGGGAGGG
Arabidopsis arenosa genome assembly, chromosome: 1.
LR999451.1:112804-112823
GAGACGCCGTTGCGGGTGCGGACACGAGCG112804GAGGATCTGACGCGTTTCTCCCAGTGGGGACCGCCCCAAGAGTAGGTGCG
Raphanus sativus mRNA, clone: RSCR17P02, 5' end sequence.
FY445238.1:406-425
TCCTCCCCCTCCTGGGGCGGCCCCGCCTGG406GAGAAACGCGTCAGATCCTCCGCCCACGTCCGCACCCGCTCCTCCCGCGG
Raphanus sativus mRNA, clone: RSCS05M08, 5' end sequence.
FY447831.1:402-421
TCCTCCCCCTCCTGGGGCGGCCCCGCCTGG402GAGAAACGCGTCAGATCCTCCGCCCACGTCCGCACCCGCTCCTCCCGCGG
Raphanus sativus mRNA, clone: RSCS07M20, 5' end sequence.
FY448533.1:397-416
TCCTCCCCCTCCTGGGGCGGCCCCGCCTGG397GAGAAACGCGTCAGATCCTCCGCCCACGTCCGCACCCGCTCCTCCCGCGG
Raphanus sativus genome assembly, chromosome: 3.
LR778312.1:33519306-33519325
TCCTCCCCCTCCTGGGGCGGCCCCGCCTGG33519306GAGAAACGCGTCAGATCCTCCGCCCACGTCCGCACCCGCTCCTCCCGCGG
Raphanus sativus genome assembly, chromosome: 9.
OY743206.1:33519306-33519325
TCCTCCCCCTCCTGGGGCGGCCCCGCCTGG33519306GAGAAACGCGTCAGATCCTCCGCCCACGTCCGCACCCGCTCCTCCCGCGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAGGATCTGACGCGTTTCTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGGATCTGACGCGTTTCTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.286 | 0.277 | search_plus_done; http://172.18.8.135:50400/match?q=GAGGATCTGACGCGTTTCTC&k=0&no_gap=0&offset=0&limit=50
0.634 | 0.348 | search_minus_done; http://172.18.8.135:50400/match?q=GAGAAACGCGTCAGATCCTC&k=0&no_gap=0&offset=0&limit=45
0.638 | 0.004 | cgi_end;

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