GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 01:58:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Musa troglodytarum cultivar karat chromosome 4.
CP097506.1:51524350-51524369
ACTCTATCAAATTGGATGTGCATTATTGGT51524350GAGGCACTTTGAGCCTTGTCGATGCTGTATGTATACTTGTCAGTAAATTA
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A04.
HG996469.1:39422788-39422807
ACTCTTTCAAATTGGATGTGCAATGTCGGT39422788GAGGCACTTTGAGCCTTGTCAATGCTGTATGTATACTTGTTAGTAAATTA
Musa schizocarpa genome assembly, chromosome: S04.
LS990918.1:43984080-43984099
ACTCTATCAAATTGGATGTGCAATGTTGGT43984080GAGGCACTTTGAGCCTTGTCAATGCTGTATGTATACTTGTTAGTAAATTA
Vaccinium vitis-idaea genome assembly, chromosome: 2.
OY978216.1:14066102-14066121
TGACGTAGAGGAGCAACCATTTGTCCATTT14066102GAGGCACTTTGAGCCTTGTCAACTATACCTCCTTTTTTGATTTTGCTATC
Musa acuminata subsp. malaccensis isolate AA chromosome 1.
CP126370.1:5232902-5232921
TAATTTACTAACAAGTATACATACAGCATT5232902GACAAGGCTCAAAGTGCCTCACCGACATTGCACATCCAATTTGAAAGAGT
Musa acuminata subsp. malaccensis isolate AA chromosome 12.
CP126381.1:5199166-5199185
TAATTTACTAACAAGTATACATACAGCATT5199166GACAAGGCTCAAAGTGCCTCACCGACATTGCACATCCAATTTGAAAGAGT
Criorhina berberina genome assembly, chromosome: 2.
OU862871.1:90689505-90689524
CTGGAAATAAAATCTCTAATCAAGTTGATA90689505GACAAGGCTCAAAGTGCCTCCATAATAATAATAATAATAATGATTTCCTA
Meconema thalassinum genome assembly, chromosome: 1_1.
OX336388.2:139744713-139744732
ATGCAACTTTTCGGATCTTCGTGGTAAGAG139744713GACAAGGCTCAAAGTGCCTCGGTGGGAAACAGGAGTGGAGGAAAGCAGAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAGGCACTTTGAGCCTTGTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGGCACTTTGAGCCTTGTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.124 | 0.115 | search_plus_done; http://172.18.8.135:50400/match?q=GAGGCACTTTGAGCCTTGTC&k=0&no_gap=0&offset=0&limit=50
0.168 | 0.044 | search_minus_done; http://172.18.8.135:50400/match?q=GACAAGGCTCAAAGTGCCTC&k=0&no_gap=0&offset=0&limit=46
0.171 | 0.003 | cgi_end;

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