GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:53:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Meles meles genome assembly, chromosome: 15.
OV277456.1:84546069-84546088
GATAAAAGGGAAAAACAAAAACAAAAAGAG84546069GAGGCTCTGTCTCCTGAAAAACTACTATTCCTGGTGCCTGCCTTTATCCC
Meles meles genome assembly, chromosome: 16.
OV277457.1:1241226-1241245
GATAAAAGGGAAAAACAAAAACAAAAACAG1241226GAGGCTCTGTCTCCTGAAAAACTACTATTCCTGGTGCCTGCCTTTATCCC
Meles meles genome assembly, chromosome: Y.
OV277463.1:42592161-42592180
GATAAAAGGGAAAAACAAAAACAAAAACAG42592161GAGGCTCTGTCTCCTGAAAAACTACTATTCCTGGTGTCTGCCTTTATCCC
Meles meles genome assembly, chromosome: Y.
OV277463.1:43837702-43837721
ATAAAAGGGAAAAACAAAAACAAAAAACAG43837702GAGGCTCTGTCTCCTGAAAAACTACTATTCCTGGAGCCTGGCTTTATCCC
TSA: Cannabis sativa PK06779.3_1.CasaPuKu mRNA sequence.
JP449522.1:684-703
GATATTCATTTGGCTAAACAAGCTCTGTCT684GAGGCTCTGTCTCCTGAAAAGTCAACATCTTTGACTCATCATGATCAAAA
Plecturocebus moloch clone LB5-12B11, WORKING DRAFT SEQUENCE, 5 ordered pieces.
AC187181.3:31123-31142
CCACTGCAAATTCAGCCTGGGTGACAGAGT31123GAGGCTCTGTCTCCTGAAAAAAGAAAAAGCCTATTCCTAACCCTCAGACA
Plecturocebus moloch clone LB5-157D23, WORKING DRAFT SEQUENCE, 12 ordered pieces.
AC187428.3:113641-113660
CCACTGCAAATTCAGCCTGGGTGACAGAGT113641GAGGCTCTGTCTCCTGAAAAAAGAAAAAGCCTATTCCTAACCCTCAGACA
Electrophaes corylata genome assembly, chromosome: 19.
OX352717.1:2203818-2203837
ACTAGTAGTAAAATATTTTCACACTAAATT2203818GAGGCTCTGTCTCCTGAAAAAACGTTAGCTGTGGCGCAAAAGACAATACT
Electrophaes corylata genome assembly, chromosome: 29.
OX352727.1:2080964-2080983
CTATTATTAAATGTTTTAAACAATATAATT2080964GAGGCTCTGTCTCCTGAAAAAGCGTTATCTGTAAGTATGTAAGTGTAATA
Plemyria rubiginata genome assembly, chromosome: 20.
OY754925.1:5355775-5355794
TGGAAACAATTAAAAAAAACAGTAAAGTAT5355775GAGGCTCTGTCTCCTGAAAAGCGTTAGCTGTGGCCCAAGAAACAGTACTG
Lutra lutra genome assembly, chromosome: 6.
LR738408.1:108762050-108762069
GCCAGTTGATAAGGGAGCCTTAGAAAGTAG108762050TTTTCAGGAGACAGAGCCTCAGAGGACAGAGCAGAGAGGGAAGAGCTGAG
Meles meles genome assembly, chromosome: 10.
OV277451.1:93821839-93821858
GGGATAAAGGCAGGCACCAGGAACAGTAGT93821839TTTTCAGGAGACAGAGCCTCCTGTTTTTGTTTTTGTTTTTCCCTTTTATC
Meles meles genome assembly, chromosome: Y.
OV277463.1:42901952-42901971
GGGATAAAGGCAGACACCAGGAATAGTAGT42901952TTTTCAGGAGACAGAGCCTCCTGTTTTTTTTTGTTGTTGTTGTTGTTGTT
Meles meles genome assembly, chromosome: Y.
OV277463.1:43888865-43888884
GGGATAAAGCCAGGCTCCAGGAATAGTAGT43888865TTTTCAGGAGACAGAGCCTCCTGTTTTTTGTTTTTGTTTTTCCCTTTTAT
Chloroclysta siterata genome assembly, chromosome: 17.
OW028605.1:3813231-3813250
AGTACTGTTTCTTGGGCTACAGCTAACGCT3813231TTTTCAGGAGACAGAGCCTCCCACTTCAATTTTGATTTTATTCTCTTTCT
Electrophaes corylata genome assembly, chromosome: 4.
OX352702.1:4925647-4925666
TTGGGAGAGTACTGTCTTCCAAGCCACGCT4925647TTTTCAGGAGACAGAGCCTCAGTTTACTATTGAAAACGTTTGATTATGAT
Plemyria rubiginata genome assembly, chromosome: 6.
OY754911.1:10470528-10470547
AGTACTGCCTCTTGGGCCACAGCTAACGCT10470528TTTTCAGGAGACAGAGCCTCACACTTACTGCTGGTTTTGATAATTATTGC
Plemyria rubiginata genome assembly, chromosome: 23.
OY754928.1:9448136-9448155
GGTACTGTTTCTTCGGGCAAAGCTAACGCT9448136TTTTCAGGAGACAGAGCCTCACACTTGCTGTTGATTTTGTTAATTAAAAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAGGCTCTGTCTCCTGAAAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGGCTCTGTCTCCTGAAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.173 | 0.164 | search_plus_done; http://172.18.8.135:50400/match?q=GAGGCTCTGTCTCCTGAAAA&k=0&no_gap=0&offset=0&limit=50
0.280 | 0.108 | search_minus_done; http://172.18.8.135:50400/match?q=TTTTCAGGAGACAGAGCCTC&k=0&no_gap=0&offset=0&limit=40
0.286 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).