GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 18:14:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CGN-36946 Leaf Coffea canephora cDNA clone cccl25j8 5', mRNA sequence.
DV692917.1:200-221
ACTTTCCAAGGAGTAGCCAACTACCCTCCT200CAACCAGTGATCGGCTTCCCTCAGCCGGTCCCACCTCCGGGTGCCTCAGATC
TransId-226233 CACATN1 Coffea arabica cDNA clone CACATN1-8729TV similar to F20D23.22 protein - Arabidopsis thaliana (Mouse-ear cress), mRNA sequence.
GR994565.1:54-75
ACTTTCTTAGGAGTAGCCAACTACCCTCCT54CAACCAGTGATCGGCTTCCCTCAGCCGGTCCCACCTCCAGGTGCCTCAGATC
TransId-231018 CAET42MIX Coffea arabica cDNA clone CAET42MIX-CFEVP22TV similar to F20D23.22 protein - Arabidopsis thaliana (Mouse-ear cress), mRNA sequence.
GT005889.1:337-358
ACTTTCCAAGGAGTAGCCAACTACCCTCCT337CAACCAGTGATCGGCTTCCCTCAGCCGGTCCCACCTCCAGGTGCCTCAGATC
TransId-234322 CAET42MIX Coffea arabica cDNA clone CAET42MIX-CFEWT55TV similar to F20D23.22 protein - Arabidopsis thaliana (Mouse-ear cress), mRNA sequence.
GT007099.1:322-343
ACTTTCCAAGGAGTAGCCAACTACCCTCCT322CAACCAGTGATCGGCTTCCCTCAGCCGGTCCCACCTCCAGGTGCCTCAGATC
CC00-XX-EC1-073-H04-EC.F Coffea canephora EC1 Coffea canephora cDNA clone CC00-XX-EC1-073-H04-EC, mRNA sequence.
GT655845.1:165-186
ACTTTCCAAGGAGTAGCCAACTACCCTCCT165CAACCAGTGATCGGCTTCCCTCAGCCGGTCCCACCTCCAGGTGCATCAGATC
CR00-XX-FR4-053-F06-EQ.F Coffea racemosa FR4 Coffea racemosa cDNA clone CR00-XX-FR4-053-F06-EQ, mRNA sequence.
GT661822.1:149-170
ACTTTCCAAGGAGTAGCCAACTACCCTCCT149CAACCAGTGATCGGCTTCCCTCAGCCGGTCCCACCTCCAGGTGCCTCAGATC
CA00-XX-FB2-051-H02-EP.F Coffea arabica FB2 Coffea arabica cDNA clone CA00-XX-FB2-051-H02-EP, mRNA sequence.
GW463745.1:173-194
ACTTTCCAAGGAGTAGCCAACTACCCTCCT173CAACCAGTGATCGGCTTCCCTCAGCCGGTCCCACCTCCAGGTGCCTCAGATC
CA00-XX-FB2-048-H02-MC.F Coffea arabica FB2 Coffea arabica cDNA clone CA00-XX-FB2-048-H02-MC, mRNA sequence.
GW484728.1:178-199
ACTTTCCAAGGAGTAGCCAACTACCCTCCT178CAACCAGTGATCGGCTTCCCTCAGCCGGTCCCACCTCCAGGTGCCTCAGATC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAGGGAAGCCGATCACTGGTTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGGGAAGCCGATCACTGGTTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.157 | 0.148 | search_plus_done; http://172.18.8.135:50400/match?q=GAGGGAAGCCGATCACTGGTTG&k=0&no_gap=0&offset=0&limit=50
0.788 | 0.631 | search_minus_done; http://172.18.8.135:50400/match?q=CAACCAGTGATCGGCTTCCCTC&k=0&no_gap=0&offset=0&limit=50
0.793 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).