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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 12:14:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 95466 from Patent WO2008034648.
FB876193.1:1798-1818
CTTGTCCGACTTCTTGGCTGTTGTGTTTAT1798GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC
Sequence 95520 from Patent WO2008034648.
FB876247.1:1795-1815
CTTGTCCGACTTCTTGGCTGTTGTGTTTAT1795GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAT
Sequence 95466 from Patent EP2090662.
HB746252.1:1798-1818
CTTGTCCGACTTCTTGGCTGTTGTGTTTAT1798GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC
Sequence 95520 from Patent EP2090662.
HB746306.1:1795-1815
CTTGTCCGACTTCTTGGCTGTTGTGTTTAT1795GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAT
Sequence 4 from patent US 5484905.
I17186.1:1798-1818
CTTGTCCGACTTCTTGGCTGTTGTGTTTAT1798GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAT
Brassica oleracea SRK2-b mRNA, complete cds.
AB024416.1:1795-1815
CTTGTCCGACTTCTTGGCTGTTGTGTTTAT1795GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAT
Brassica rapa SRK-60, SLG-60 genes for S receptor kinase, S-locus glycoprotein, partial cds.
AB097116.1:29791-29811
CTTGTCCGACTTCTTGGCTGTTGTGTTTAT29791GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC
Brassica oleracea S-15 SRK gene for S-locus receptor kinase, complete cds.
AB180903.1:16283-16303
CTTGTCCGACTTCTTGGCTGTTGTGTTTAT16283GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC
Brassica rapa SRK40 mRNA for S-receptor kinase, complete cds.
AB211197.1:1798-1818
CTTGTCCGACTTCTTGGCTGTTGTGTTTAT1798GAGGGCGAGAAGATCTTAATTTACGAGTACATGGAGAATTTAAGCCTCGAT
Brassica rapa SRK44 mRNA for S-receptor kinase, complete cds.
AB211198.1:1795-1815
CTTGTCCGACTTCTTGGCTGTTGTGTTTAT1795GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAT
Brassica napus BnSRK-6 mRNA for S receptor kinase, partial cds.
AB270768.1:1789-1809
CTTGTCCGACTTCTTGGCTGTTGTGTTTAT1789GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC
Brassica napus BnSRK-6 gene for S receptor kinase, complete cds.
AB270772.1:7707-7727
CTTGTCCGACTTCTTGGCTGTTGTGTTTAT7707GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC
Brassica rapa SRK-40 mRNA for S-locus receptor kinase, partial cds.
AB298880.1:493-513
CTTGTCCGACTTCTTGGCTGTTGTGTTTAT493GAGGGCGAGAAGATCTTAATTTACGAGTACATGGAGAATTTAAGCCTCGAT
Brassica rapa SRK-44 mRNA for S-locus receptor kinase (kinase domain), partial cds.
AB298882.1:493-513
CTTGTCCGACTTCTTGGCTGTTGTGTTTAT493GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAT
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:47277837-47277857
CTTGTCCGACTTCTTGGCTGTTGTGTTTAT47277837GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC
Brassica cretica haplotype Bcr202b SRK protein gene, exons 4 through 6 and partial cds.
FJ670487.1:2-22
T2GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC
Brassica cretica haplotype Bcr203b SRK protein gene, exons 4 through 7 and partial cds.
FJ670489.1:2-22
T2GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC
Brassica cretica haplotype Bcr203c SRK protein gene, exons 4 through 7 and partial cds.
FJ670490.1:2-22
T2GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC
Brassica cretica haplotype Bcr203d SRK protein gene, exons 4 through 7 and partial cds.
FJ670491.1:2-22
T2GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC
Brassica cretica haplotype Bcr204c SRK protein gene, exons 4 through 7 and partial cds.
FJ670494.1:2-22
T2GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAT
Brassica cretica haplotype Bcr206a SRK protein gene, exons 4 through 7 and partial cds.
FJ670496.1:2-22
T2GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAT
Brassica napus genome assembly, chromosome: C06.
HG994370.1:41273852-41273872
CTTGTCCGACTTCTTGGCTGTTGTGTTTAT41273852GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC
Brassica oleracea var. italica haplotype BOI1 SRK protein gene, partial cds.
JQ253785.1:1-21
1GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAT
Brassica rapa BrSRK-44 mRNA for S-locus receptor kinase, complete cds.
LC556299.1:1795-1815
CTTGTCCGACTTCTTGGCTGTTGTGTTTAT1795GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAT
Brassica rapa genome, scaffold: A07.
LR031574.1:22490496-22490516
CTTGTCCGACTTCTTGGCTGTTGTGTTTAT22490496GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:22781636-22781656
CTTGTCCGACTTCTTGGCTGTTGTGTTTAT22781636GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC
Brassica oleracea mRNA for SRK5 protein, partial.
Y18259.1:1778-1798
CTTGTCCGACTTCTTGGCTGTTGTGTTTAT1778GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAT
Brassica oleracea mRNA for SRK15 protein, partial.
Y18260.1:1769-1789
CTTGTCCGACTTCTTGGCTGTTGTGTTTAT1769GAGGGCGAGAAGATCTTAATTTACGAGTACTTGGAGAATCTAAGCCTCGAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAGGGCGAGAAGATCTTAATT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGGGCGAGAAGATCTTAATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.435 | 0.426 | search_plus_done; http://172.18.8.135:50400/match?q=GAGGGCGAGAAGATCTTAATT&k=0&no_gap=0&offset=0&limit=50
0.551 | 0.116 | search_minus_done; http://172.18.8.135:50400/match?q=AATTAAGATCTTCTCGCCCTC&k=0&no_gap=0&offset=0&limit=22
0.551 | 0.000 | cgi_end;

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