GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 18:16:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Scomber scombrus genome assembly, chromosome: 10.
OY829927.1:28472860-28472879
GCCATCTGATAAACTGTAGCACAAGAAAGA28472860ATACCAACCCAAAACCCCTCCTTTTTCCATAGATTTGTTGCTTTTATTTA
RIRL_008449 Ralstonia solanacearum challenged root cDNA library of peanut (Arachis hypogaea) Arachis hypogaea cDNA clone ocprra0_0100_B01.ab1, mRNA sequence.
JK208541.1:22-41
GGGGATATAACCCTAACATCA22ATACCAACCCAAAACCCCTCTTCCTCTCTTTCTCTCTTCATTCCTAAAAC
Arachis hypogaea DNA, clone: NYHA00A37, cultivar: Nakateyutaka.
DE998921.1:525-544
TAAAAAAAATACTATATAACCCTAACATCA525ATACCAACCCAAAACCCCTCTTCCTCTCTTTCTCTCTTCATTCCTAANAC
Arachis hypogaea cultivar Shitouqi chromosome A02.
CP030984.1:92604273-92604292
AAAAAAAACTACTATATAACCCTAACATCA92604273ATACCAACCCAAAACCCCTCCTCCTCTCTTTCTCTCTTCATTTCTAAAAC
Arachis hypogaea cultivar Shitouqi chromosome B02.
CP030994.1:106508943-106508962
TAAAAAAAATACTATATAACCCTAACATCA106508943ATACCAACCCAAAACCCCTCTTCCTCTCTTTCTCTCTTCATTCCTAAAAC
Arachis ipaensis cultivar K30076 chromosome 02.
CP049893.1:105988241-105988260
TAAAAAAAATACTATATAACCCTAACATCA105988241ATACCAACCCAAAACCCCTCTTCCTCTCTTTCTCTCTTCATTCCTAAAAC
Viscum album genome assembly, chromosome: B1.
OY728167.1:102364729-102364748
ACACTTCAAAAAACCATTTTTTTTTGGAAA102364729ATACCAACCCAAAACCCCTCAAAGAATACCTACCCACATTCTTAATTCCT
Viscum album genome assembly, chromosome: B1.
OY728167.1:115138392-115138411
ACACTTCAAAAAACCATTTTTTTTTGGAAA115138392ATACCAACCCAAAACCCCTCAAAGAATACCTACCCACATTCTTAATTCCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAGGGGTTTTGGGTTGGTAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGGGGTTTTGGGTTGGTAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.092 | 0.083 | search_plus_done; http://172.18.8.135:50400/match?q=GAGGGGTTTTGGGTTGGTAT&k=0&no_gap=0&offset=0&limit=50
0.251 | 0.159 | search_minus_done; http://172.18.8.135:50400/match?q=ATACCAACCCAAAACCCCTC&k=0&no_gap=0&offset=0&limit=50
0.257 | 0.006 | cgi_end;

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