GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 22:06:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Colias croceus genome assembly, chromosome: 13.
HG991971.1:6586404-6586423
AGAGGTACTTTACGTGTCCGCCTAAATATG6586404GAGGTTTCGTGAAGCCATTGTATGTAACTGTTGGTGACTTCCCTGAAGAA
Pyralis farinalis genome assembly, chromosome: 2.
OX382258.1:9985446-9985465
CAAGAGTATATATAAACAAACCATAAAACT9985446GAGGTTTCGTGAAGCCATTGTTTTAACTAGGGTCCTGAATGCAGTTTGCA
Brassica rapa subsp. chinensis BcPR5 mRNA for pathogenesis-related 5, complete cds.
AB458897.1:44-63
CACTCACTCCTTGCTCAAGTGGAGCTCGAT44CAATGGCTTCACGAAACCTCTTCAACTTCGCTCTCCTTCTTCTTATCTCT
Brassica rapa subsp. chinensis pathogenesis-related 5 protein (PR5) mRNA, complete cds.
FJ605478.1:44-63
CACTCACTCCTTGCTCAAGTGGAGCTCGAT44CAATGGCTTCACGAAACCTCTTCAACTTCGCTCTCCTTCTTCTTATCTCT
Brassica rapa pathogenesis-related group 5 protein (BFTP) mRNA, complete cds.
U71244.1:23-42
CCTTGCTCAAGTGGAGCTCGAT23CAATGGCTTCACGAAACCTCTTCAACTTCGCTCTCCTTCTTCTTATCTCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GAGGTTTCGTGAAGCCATTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGGTTTCGTGAAGCCATTG | format : html | download : | debug : 

0.010 | 0.010 | search_start;
0.130 | 0.120 | search_plus_done; http://172.18.8.135:50400/match?q=GAGGTTTCGTGAAGCCATTG&k=0&no_gap=0&offset=0&limit=50
0.160 | 0.030 | search_minus_done; http://172.18.8.135:50400/match?q=CAATGGCTTCACGAAACCTC&k=0&no_gap=0&offset=0&limit=48
0.162 | 0.003 | cgi_end;

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