GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:34:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Hyperoodon ampullatus genome assembly, chromosome: 3.
OX457058.1:26797736-26797753
TAAGGATGCTTGTTTTCGAGTGACCAGCCG26797736GAGTGGCACCTGGAAATCAGGAAACTGGACAAGAACATGGAAAAGTCG
Balaenoptera acutorostrata genome assembly, chromosome: 3.
OX465352.1:27463888-27463905
TAAGGATGCTTGTATTCGAGTGACCAGCCA27463888GAGTGGCACCTGGAAATCAGGAAACTGGACAAGAACATGGGAAAGTCG
Oryzias latipes strain HSOK chromosome 17.
CP020637.1:31110764-31110781
ACCAGAGGGTGGGGGGGGGGCTTTTGGTTT31110764GAGTGGCACCTGGAAATCCTGGTGTCAGTCTGTGACACTGGTGGGGGT
Oryzias latipes strain Hd-rR chromosome 17 sequence.
CP020681.1:29725061-29725078
ATAACCAGAGGGGGGGGGGGCTTTTGGCTT29725061GAGTGGCACCTGGAAATCCTGGTGTCAGTCTGTGACACTGGTGGGGGT
Oryzias latipes strain HNI chromosome 17.
CP020795.1:27127605-27127622
CAGAGAGGGGGTGGGGGGGGCTTTTGGCTT27127605GAGTGGCACCTGGAAATCCTGGTGTCAGTCTGTGACACTGGTGGGGGT
Aquila chrysaetos chrysaetos genome assembly, chromosome: 13.
LR606193.1:29193074-29193091
GGCTGTCAAAGCAATGAGTGGCACACGGCT29193074GAGTGGCACCTGGAAATCATGCAGACCTTCCATCCGGTGCCCCAGGGA
Erithacus rubecula genome assembly, chromosome: 2.
LR812104.1:65949366-65949383
GTCTGTCAAAGCAGTGATTGGCATATGGCT65949366GAGTGGCACCTGGAAATCATGCAGACCTTTCATCCAGACTTATGAGGA
Anas platyrhynchos genome assembly, chromosome: 8.
LS423618.1:27744620-27744637
GACATCACAAAGCGGAGTGAGCAGGTGACA27744620GAGTGGCACCTGGAAATCCAGGTTAAGAAATACGAAGTAATGCATGTG
Caprimulgus europaeus genome assembly, chromosome: 2.
OU015524.1:41911308-41911325
GGCTGTCAAAGCAATGAGTGGTACACAGCT41911308GAGTGGCACCTGGAAATCATGCAGACCTTCCATCCAGCACCCCAGGGA
Acrocephalus scirpaceus scirpaceus genome assembly, chromosome: 4.
OU383777.1:69748935-69748952
ATCAAAGAGAATCAACTTTCATTCCTGTAA69748935GAGTGGCACCTGGAAATCCTACACACAGAATGGAACATGGCTTGTCAA
Accipiter gentilis genome assembly, chromosome: 28.
OV839389.1:9237818-9237835
GGCTGTCAAAGCAATGAGTGGCACACGGCT9237818GAGTGGCACCTGGAAATCGCGCATCCCTTCCATCCAGTGCCCCAGGGA
Haliaeetus albicilla genome assembly, chromosome: 13.
OX381650.1:30614341-30614358
GGCTGTCAAGGCAATGAGTGGCACACGGCT30614341GAGTGGCACCTGGAAATCATGCAGCCCTAAAATCCGGTGCCCCAGGGA
Somateria mollissima genome assembly, chromosome: 8.
OX598310.1:28821153-28821170
GACATCACAAAGTGGAGTGAGCAGGTGACA28821153GAGTGGCACCTGGAAATCCAGGTTAAGAAATTCGAAGTAATGCATGTG
Somateria mollissima genome assembly, chromosome: 8.
OX598697.1:28668925-28668942
GACATCACAAAGTGGAGTGAGCAGGTGACA28668925GAGTGGCACCTGGAAATCCAGGTTAAGAAATTCGAAGTAATGCATGTG
Fringilla coelebs genome assembly, chromosome: 3.
OY740726.1:69235045-69235062
GGTCTGTCAAAGCAGTGATGGCACGTGGCT69235045GAGTGGCACCTGGAAATCTTGCAGAGCTTCCATCCAGTGCCACGGGGA
Cinclus cinclus genome assembly, chromosome: 3.
OY759679.1:67640230-67640247
GTCAGTCAAAGCAGTGATTGGCACATGGCT67640230GAGTGGCACCTGGAAATCGTGCAGACCTTCCATCCAGTGCCATGAGGA
EG-A01_006_F05 Oil palm normal apex Lambda Zap Library Elaeis guineensis cDNA, mRNA sequence.
CN599614.1:25-42
TTTTTNNNNTTNNNNNNTTTTTTT25GAGTGGCACCTGGAAATCCCATATATATATATATATATATACACACAC
Trypanosoma cruzi strain CL Brener clone GAMER54, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces.
AC105296.1:5743-5760
TTATGCAGCCAGCCAAACGGCCGTTTCTGG5743GAGTGGCACCTGGAAATCAGTGAGTCCAGTGACGAAGATGCAACAGAC
Geranium rotundifolium genome assembly, chromosome: 1.
OY987311.1:11717375-11717392
GATGGAGACAAGAAAGAGAGCAAGAGCCTT11717375GAGTGGCACCTGGAAATCAAACAAATCTCGACGCTTAGTACTGAAAAG
Notocelia uddmanniana genome assembly, chromosome: Z.
LR991052.1:59702911-59702928
GTTAATATTTGAATCCTCTTAATTACAAAA59702911GAGTGGCACCTGGAAATCAGACAAAGAAATTAAAATTACTTAAGAAAT
Diatraea saccharalis genome assembly, chromosome: 9.
OU893340.1:17875444-17875461
GATTCTACTCACCAAAAAGCCTTAAGTTGC17875444GAGTGGCACCTGGAAATCTGTATTTAATCGCCGGGATAGATACTTCTT
Sus scrofa scrofa breed NS chromosome 7.
CP071558.1:103998392-103998409
CATCTCTGCCACTTTTCTTTCATCTGATGA103998392GATTTCCAGGTGCCACTCTTACAGCTATTAAATGAGTACAGTGTTGGT
Cervus elaphus genome assembly, chromosome: 21.
OU343098.1:26845413-26845430
AAATGAAGACCAGGGAAGGCCTGGACTGGT26845413GATTTCCAGGTGCCACTCAGTTGAGCACAACTGACCTGCATTATTGCT
Martes martes genome assembly, chromosome: 9.
OY734071.1:19210814-19210831
TTCTTCCTTAGTCTGTCCATCTTTCCCATA19210814GATTTCCAGGTGCCACTCTCTGTTCTATGGTATTTGAACAGCCCATTC
Sus scrofa genome assembly, chromosome: 7.
OY997214.1:110386967-110386984
CATCTCTGCCACTTTTCTTTCATCTGATGA110386967GATTTCCAGGTGCCACTCTTACAGCTATTAAATGAGTACAGTGTTGGT
Acrocephalus scirpaceus scirpaceus genome assembly, chromosome: 3.
OU383775.1:45848148-45848165
TCCCCGTGGCACTGGATGGAAAGTTTGCAA45848148GATTTCCAGGTGCCACTCAGCCATGTGCCAATCACTGCTTTGACAGAC
Anas acuta genome assembly, chromosome: 8.
OZ009970.1:3578244-3578261
CACATGCATTACTTCGAATTTCTTAACCTG3578244GATTTCCAGGTGCCACTCTGTCACCTGCTCACTCCGCTTTGTGATGTC
Elaeis guineensis EST, clone (6lib)_isotig19903.
LM623739.1:1175-1192
GTGTGTGTGTATATATATATATATATATGG1175GATTTCCAGGTGCCACTCAAGCATTTTAAT
Triticum aestivum genome assembly, chromosome: 6D.
LR862525.1:170412188-170412205
CATGGCAAGTCGCCAGTTGATCAAGTTCAA170412188GATTTCCAGGTGCCACTCCCACCGCGCCAACCCACTGGCACCCTCACG
Triticum aestivum genome assembly, chromosome: 6D.
LR862546.1:178968402-178968419
CATGGCAAGTCGCCAGTTGATCAAGTTCAA178968402GATTTCCAGGTGCCACTCCCACCGCGCCAACCCACTGGCACCCTCACG
Triticum aestivum genome assembly, chromosome: 6D.
LR862567.1:187931326-187931343
CATGGCAAGTCGCCAGTTGATCAAGTTCAA187931326GATTTCCAGGTGCCACTCCCACCGCGCCAACCCACTGGCACCCTCACG
Triticum aestivum genome assembly, chromosome: 6D.
LR865475.1:189156830-189156847
CATGGCAAGTCGCCAGTTGATCAAGTTCAA189156830GATTTCCAGGTGCCACTCCCACCGCGCCAACCCACTGGCACCCTCACG
Triticum aestivum genome assembly, chromosome: 6D.
LR865496.1:181984694-181984711
CATGGCAAGTCGCCAGTTGATCAAGTTCAA181984694GATTTCCAGGTGCCACTCCCACCGCGCCAACCCACTGGCACCCTCACG
Triticum aestivum genome assembly, chromosome: 6D.
LR865517.1:191535131-191535148
CATGGCAAGTCGCCAGTTGATCAAGTTCAA191535131GATTTCCAGGTGCCACTCCCACCGCGCCAACCCACTGGCACCCTCACG
Triticum aestivum genome assembly, chromosome: 6D.
LR865756.1:195626840-195626857
CATGGCAAGTCGCCAGTTGATCAAGTTCAA195626840GATTTCCAGGTGCCACTCCCACCGCGCCAACCCACTGGCACCCTCACG
Triticum aestivum genome assembly, chromosome: 6D.
LR865777.1:192620548-192620565
CATGGCAAGTCGCCAGTTGATCAAGTTCAA192620548GATTTCCAGGTGCCACTCCCACCGCGCCAACCCACTGGCACCCTCACG
Triticum aestivum genome assembly, chromosome: 6D.
LR877326.1:193389591-193389608
CATGGCAAGTCGCCAGTTGATCAAGTTCAA193389591GATTTCCAGGTGCCACTCCCACCGCGCCAACCCACTGGCACCCTCACG
Triticum aestivum genome assembly, chromosome: 6D.
LR878452.1:190363751-190363768
CATGGCAAGTCGCCAGTTGATCAAGTTCAA190363751GATTTCCAGGTGCCACTCCCACCGCGCCAACCCACTGGCACCCTCACG
Triticum aestivum genome assembly, chromosome: 6D.
LS992097.1:184135538-184135555
CATGGCAAGTCGCCAGTTGATCAAGTTCAA184135538GATTTCCAGGTGCCACTCCCACCGCGCCAACCCACTGGCACCCTCACG
Triticum aestivum genome assembly, chromosome: 6D.
OU015738.1:212309932-212309949
CATGGCAAGTCGCCAGTTGATCAAGTTCAA212309932GATTTCCAGGTGCCACTCCCACCGCGCCAACCCACTGGCACCCTCACG
Triticum aestivum genome assembly, chromosome: 6D.
OU343188.1:213184656-213184673
CATGGCAAGTCGCCAGTTGATCAAGTTCAA213184656GATTTCCAGGTGCCACTCCCACCGCGCCAACCCACTGGCACCCTCACG
Triticum aestivum genome assembly, chromosome: 6D.
OU963889.1:200001330-200001347
CATGGCAAGTCGCCAGTTGATCAAGTTCAA200001330GATTTCCAGGTGCCACTCCCACCGCGCCAACCCACTGGCACCCTCACG
Triticum aestivum genome assembly, chromosome: 6D.
OV100754.1:200516725-200516742
CATGGCAAGTCGCCAGTTGATCAAGTTCAA200516725GATTTCCAGGTGCCACTCCCACCGCGCCAACCCACTGGCACCCTCACG
Triticum aestivum genome assembly, chromosome: 6D.
OW530327.1:200516725-200516742
CATGGCAAGTCGCCAGTTGATCAAGTTCAA200516725GATTTCCAGGTGCCACTCCCACCGCGCCAACCCACTGGCACCCTCACG
Triticum aestivum genome assembly, chromosome: 6D.
OX637242.1:140569356-140569373
CATGGCAAGTCGCCAGTTGATCAAGTTCAA140569356GATTTCCAGGTGCCACTCCCACCGCGCCAACCCACTGGCACCCTCACG
Alisma plantago-aquatica genome assembly, chromosome: 1.
OY856409.1:1218781222-1218781239
AGAGTTACAGTGGCTTGACATCAAGGTTGG1218781222GATTTCCAGGTGCCACTCAATATGCACAAGTGGTGTGGTTCTAGGAGC
Rutpela maculata genome assembly, chromosome: 3.
OW386287.2:175231749-175231766
CACTATATCTTATTATAGCGATCGACCCAA175231749GATTTCCAGGTGCCACTCGTGTTGTAAAAGAAAAATGATAAAATGGTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAGTGGCACCTGGAAATC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGTGGCACCTGGAAATC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.284 | 0.275 | search_plus_done; http://172.18.8.135:50400/match?q=GAGTGGCACCTGGAAATC&k=0&no_gap=0&offset=0&limit=50
0.529 | 0.245 | search_minus_done; http://172.18.8.135:50400/match?q=GATTTCCAGGTGCCACTC&k=0&no_gap=0&offset=0&limit=29
0.547 | 0.018 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).