GGGenome | Results

2025-04-09 11:45:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

UCRCS03_04M12_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa04M12, mRNA sequence.
CF837511.1:85-104

AACATAAACAACAGCTGGATACAACCAACC85GAGTTCGGGTTCACACATCATGATCCGACCCGGAAAGACCAACATATCAA

UCRPT01_0005L11_f Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0005L11, mRNA sequence.
CV704652.1:84-103

AACATAAACAACAGCTGGATACAACCAACC84GAGTTCGGGTTCACACATCATGATCCGACCCGCAAAGACCAACATATCAA

UCRPT01_0006J19_f Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0006J19, mRNA sequence.
CV705257.1:86-105

AACATAAACAACAGCTGGATACAACCAACC86GAGTTCGGGTTCACACATCATGATCCGACCCGGAAAGACCAACATATCAA

UCRPT01_0014A07_f Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cDNA clone PT_6Ea0014A07, mRNA sequence.
CV710190.1:54-73

AACATAAACAACAGCTGGATACAACCAACC54GAGTTCGGGTTCACACATCATGATCCGACCCGCAAAGACCAACATATCAA

UFPtC01_043 Cold-induced subtractive cDNA library Citrus trifoliata cDNA clone C43, mRNA sequence.
CX065960.1:101-120

AACATAAACAACAGCTGGATACAACCAACC101GAGTTCGGGTTCACACATCATGATCCGACCCGGAAAGACCAACATATCAA

UFPtC01_044 Cold-induced subtractive cDNA library Citrus trifoliata cDNA clone C44 similar to Elicitor inducible protein, mRNA sequence.
CX065961.1:116-135

AACATAAACAACAGCTGGATACAACCAACC116GAGTTCGGGTTCACACATCATGATCCGACCCGGAAAGACCAACATATCAA

C05133B11SK FerrChloR1 Citrus sinensis x Citrus trifoliata cDNA clone C05133B11, mRNA sequence.
CX296058.1:63-82

AACATAAACAACAGCTGGATACAACCAACC63GAGTTCGGGTTCACACATCATGATCCGACCCGGAAAGACCGACATATCAA

C05807D04SK FerrChloR1 Citrus sinensis x Citrus trifoliata cDNA clone C05807D04, mRNA sequence.
CX296988.1:54-73

AACATAAACAACAGCTGGATACAACCAACC54GAGTTCGGGTTCACACATCATGATCCGACCCGGAAAGACCGACATATCAA

C05809D02SK FerrChloR1 Citrus sinensis x Citrus trifoliata cDNA clone C05809D02, mRNA sequence.
CX297163.1:35-54

AACATAAACAACATCCGGATACAACCAACC35GAGTTCGGGTTCACACATCATGATCCGACCCGGAAAGACCGACATATCAA

UCRPT01_5_003_H06_T7 Poncirus trifoliata CTV-challenged cDNA library - UCRPT01-UCR2 Citrus trifoliata cDNA clone UCRPT01_003_T7_H06, mRNA sequence.
CX542978.1:78-97

AACATAAACAACAGCTGGATACAACCAACC78GAGTTCGGGTTCACACATCATGATCCGACCCGCAAAGACCAACATATCAA

UCRPT01_5_006_E04_T7 Poncirus trifoliata CTV-challenged cDNA library - UCRPT01-UCR2 Citrus trifoliata cDNA clone UCRPT01_006_T7_E04, mRNA sequence.
CX543368.1:89-108

AACATAAACAACAGCTGGATACAACCAACC89GAGTTCGGGTTCACACATCATGATCCGACCCGCAAAGACCAACATATCAA

UCRPT01_5_008_B02_T7 Poncirus trifoliata CTV-challenged cDNA library - UCRPT01-UCR2 Citrus trifoliata cDNA clone UCRPT01_008_T7_B02, mRNA sequence.
CX543628.1:75-94

AACATAAACAACAGCTGGATACAACCAACC75GAGTTCGGGTTCACACATCATGATCCGACCCGGAAAGACCAACATATCAA

UCRPT02_13D07_b Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifoliata cDNA clone UCRPT02-13D07-H14-1-6.b, mRNA sequence.
CX635702.1:90-109

AACATAAACAACAGCTGGATACAACCAACC90GAGTTCGGGTTCACACATCATGATCCGACCCGGAAAGACCAACATATCAA

UCRPT02_58C02_g Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifoliata cDNA clone UCRPT02-58C02-E3-1-5.g, mRNA sequence.
CX642142.1:87-106

AACATAAACAACAGCTGGATACAACCAACC87GAGTTCGGGTTCACACATCATGATCCGACCCGGAAAGACCAACATATCAA

UCRCP01_012_D09_T3 Swingle citrumelo nematode-challenged root cDNA library - UCRCP01 Citrus x paradisi x Citrus trifoliata cDNA clone UCRCP01_012_T3_D09, mRNA sequence.
CX664786.1:47-66

AACATAAACAACAGCTGGATACAACCAACC47GAGTTCGGGTTCACACATCATGATCCGACCCGGAAAGACCAACATATCAA

UCRCS11_05I16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0005I16, mRNA sequence.
DN620589.1:82-101

AACATAAACAACAGCTGGATACAACCAACC82GAGTTCGGGTTCACACATCATGATCCGACCCGGAAAGACCAACATATCAA

F1A7 Cold-stressed leaf SSH cDNA library of Poncirus trifoliata Citrus trifoliata cDNA, mRNA sequence.
HO772563.1:85-104

AACATAAACAACAGCTGGATACAACCAACC85GAGTTCGGGTTCACACATCATGATCCGACCCGCAAAGACCAACATATCAA

Sequence 31 from Patent EP2609205.
JB832843.1:906-925

TTGATATGTTGGTCTTTCCGGGTCGGATCA906TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

Sequence 149 from Patent EP2609205.
JB832961.1:908-927

TTGATATGTTGGTCTTTCCGGGTCGGATCA908TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

Sequence 31 from Patent EP2835427.
LP003368.1:906-925

TTGATATGTTGGTCTTTCCGGGTCGGATCA906TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

Sequence 149 from Patent EP2835427.
LP003486.1:908-927

TTGATATGTTGGTCTTTCCGGGTCGGATCA908TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

UCRCS03_04M12_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa04M12, mRNA sequence.
CF837512.1:578-597

TTGATATGTTGGTCTTTCCGGGTCGGATCA578TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

C06013E08SK FlavCurFr1 Citrus clementina x Citrus tangerina cDNA clone C06013E08, mRNA sequence.
CX298605.1:247-266

TTGATATGTCGGTCTTTCCGGGTCGGATCA247TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

UCRCP01_012_D09_T7 Swingle citrumelo nematode-challenged root cDNA library - UCRCP01 Citrus x paradisi x Citrus trifoliata cDNA clone UCRCP01_012_T7_D09, mRNA sequence.
CX664787.1:778-797

TTGATATGTTGGTCTTTCCGGGTCGGATCA778TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

Citrus unshiu mRNA, clone: BFC3E55, 5'-end sequence, expressed in flavedo.
DC885725.1:209-228

TTGATATGTTGGTCTTTCCGGGTCGGATCA209TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

Citrus limon mRNA, clone: LLL1282, 5'-end sequence, expressed in leaf.
DC892337.1:174-193

TTGATATGTTGGTCTTACCGGGTCGGATCA174TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

Citrus unshiu mRNA, clone: MWYEE17, 3'-end sequence, expressed in whole fruit.
DC894838.1:409-428

TTGATATGTTGGTCTTTCCGGGTCGGATCA409TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

Volcani_1_11_A01 Volcani01 Citrus reticulata x Citrus temple cDNA, mRNA sequence.
DN795748.1:742-761

TTGATATGTTGGTCTGTCCGGGTCGGATCA742TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

USDA-FP/ARO_11647 Star Ruby grapefruit temperature-conditioned flavedo cDNA Citrus x paradisi cDNA clone Cond-01_G11 5', mRNA sequence.
DN796779.1:173-192

TTGATATGTTGGTCTTTCCGGGTCGGATCA173TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

USDA-FP_20102 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-38_B10 5', mRNA sequence.
DR911974.1:98-117

TTGATATGTTGGTCTTTCCGGGTCGGATCA98TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

IC0AAA22AE08RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY267682.1:892-911

TTGATATGTCGGTCTTTCGGGGTCGGATCA892TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGGTTATGTA

IC0AAA30AG01RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY272079.1:535-554

TTGATATGTTGGTCTTTCCGGGTCGGATCA535TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

IC0AAA41DF09RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY276715.1:724-743

TTGATATGTCGGTCTTTCCGGGTCGGATCA724TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

IC0AAA62BF09RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY284811.1:892-911

TTGATATGTTGGTCTTTCCGGGTCGGATCA892TGATGTGTGAACCCGAACTCGGTTGGGTTGTATCCAGCTGTTGTTTATGT

CS00-C1-650-032-C08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
EY682384.1:174-193

TTGATATGTTGGTCTTTCCGGGTCGGATCA174TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

CS00-C3-702-003-D08-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
EY711067.1:420-439

TTGATATGTTGGTCTTTCCGGGTCGGATCA420TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

CS00-C3-703-058-F01-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
EY723416.1:454-473

TTGATATGTTGGTCTTTCCGGGTCGGATCA454TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

CS00-C3-703-060-H07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
EY723590.1:454-473

TTGATATGTTGGTCTTTCCGGGTCGGATCA454TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

CR05-C3-700-127-F11-CT.F Mandarin fruit, development stadium (1 of 3) Citrus reticulata cDNA, mRNA sequence.
EY791541.1:64-83

TTGATATGTCGGTCTTTCCGGGTCGGATCA64TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

CL06-C4-500-015-H09-CT.F Rangpur lime root, greenhouse plant Citrus limonia cDNA, mRNA sequence.
EY868321.1:153-172

TTGATATGTTGGTCTTACCGGGTCGGATCA153TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

CL06-C4-500-027-D07-CT.F Rangpur lime root, greenhouse plant Citrus limonia cDNA, mRNA sequence.
EY869352.1:153-172

TTGATATGTTGGTCTTACCGGGTCGGATCA153TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

CL06-C4-500-058-B04-CT.F Rangpur lime root, greenhouse plant Citrus limonia cDNA, mRNA sequence.
EY871417.1:104-123

ATGATATGTTGGTCTTACCGGGTCGGATCA104TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTCCTGTTTATGTT

CL06-C4-501-006-G08-CT.F Rangpur lime root, plant with hydric stress Citrus limonia cDNA, mRNA sequence.
EY873167.1:173-192

TTGATATGTTGGTCTTTCCGGGTCGGATCA173TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

CL06-C4-501-029-F02-CT.F Rangpur lime root, plant with hydric stress Citrus limonia cDNA, mRNA sequence.
EY874735.1:413-432

TTGATATGTTGGTCTTTCCGGGTCGGATCA413TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

CL06-C4-501-036-G04-CT.F Rangpur lime root, plant with hydric stress Citrus limonia cDNA, mRNA sequence.
EY875582.1:401-420

TTGATATGTTGGTCTTTCCGGGTCGGATCA401TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

TS27-C2-300-039-F04-CT.F Sunki mandarin bark, greenhouse plant Citrus sunki cDNA, mRNA sequence.
EY890745.1:384-403

TTGATATGTTGGTCTTTCCGGGTCGGATCA384TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

TS27-C2-300-044-H10-CT.F Sunki mandarin bark, greenhouse plant Citrus sunki cDNA, mRNA sequence.
EY891023.1:370-389

TTGATATGTTGGTCTTTCCGGGTCGGATCA370TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

TS27-C2-300-055-C03-CT.F Sunki mandarin bark, greenhouse plant Citrus sunki cDNA, mRNA sequence.
EY891724.1:370-389

TTGATATGTTGGTCTTTCCGGGTCGGATCA370TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

C31207D08EF BiotPhyR1 Citrus aurantium cDNA clone C31207D08, mRNA sequence.
FC874554.1:575-594

TTGATATGTCGGTCTTTCCGGGTCGGATCA575TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

IC0AAA41DF09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA41DF09, mRNA sequence.
FC899258.1:724-743

TTGATATGTCGGTCTTTCCGGGTCGGATCA724TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

IC0AAA30AG01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA30AG01, mRNA sequence.
FC915841.1:530-549

TTGATATGTTGGTCTTTCCGGGTCGGATCA530TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

IC0AAA62BF09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA62BF09, mRNA sequence.
FC917211.1:892-911

TTGATATGTTGGTCTTTCCGGGTCGGATCA892TGATGTGTGAACCCGAACTCGGTTGGGTGTATCCAGCTGTTGTTTATGTT

C08038E08SK PhyRootCl1 Citrus reshni cDNA clone C08038E08, mRNA sequence.
FC920042.1:424-443

TTGATATGTCGGTCTTTCCGGGTCGGATCA424TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

A79 'Hong Anliu' sweet orange SSH library Citrus sinensis cDNA 5', mRNA sequence.
FE659319.1:699-718

TTGATATGTCGGTCTTTCCGGGTCGGATCA699TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

Citrus sinensis genome assembly, chromosome: 8.
OY754325.1:27099446-27099465

TTGATATGTCGGTCTTTCCGGGTCGGATCA27099446TGATGTGTGAACCCGAACTCGGTTGGTTGTATCCAGCTGTTGTTTATGTT

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
0.885 | 0.876 | search_plus_done; http://172.18.8.135:50400/match?q=GAGTTCGGGTTCACACATCA&k=0&no_gap=0&offset=0&limit=50
2.938 | 2.053 | search_minus_done; http://172.18.8.135:50400/match?q=TGATGTGTGAACCCGAACTC&k=0&no_gap=0&offset=0&limit=33
2.964 | 0.026 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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