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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:52:43, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

65JKBNMO_UP_043_C07_15JUL2006_059 65JKBNM0 Brassica napus cDNA 5', mRNA sequence.
EL590305.1:29-48
GTTTTGTAATTGATAAGATTCTTGTTTT29GAGTTGGGACAAGGCTACAAATAACACTAAAAAAAAAAATTGACGTGTAG
9RDBNGA_UP_156_F07_11MAR2006_053 Brassica napus 9RDBNGA Brassica napus cDNA 5', mRNA sequence.
ES956793.1:476-495
CGTCAATTTTTTTTTTTTTTTTGGTGTTAT476TTGTAGCCTTGTCCCAACTCAAAACAAGAATATTATCAATTACAAAACGA
BOMOF10TF BO_2_3_KB Brassica oleracea genomic clone BOMOF10, genomic survey sequence.
BH647483.1:249-268
GTCAATTTTTTTTTTTTTTTTTAGTGTTAT249TTGTAGCCTTGTCCCAACTCAAAACAAGAATCTTATCAATTACAAAACGA
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:11989736-11989755
CTACACGTCAATTTTTTTTTTTAGTGTTAT11989736TTGTAGCCTTGTCCCAACTCAAAACAAGAATCTTATCAATTACAAAACGA
Brassica napus genome assembly, chromosome: C06.
HG994370.1:11503429-11503448
AATTTTTTTTTTTTTTTTTTTTGGTGTTAT11503429TTGTAGCCTTGTCCCAACTCAAAACAAGAATATTATCAATTACAAAACGA
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:8297288-8297307
GTCAATTTTTTTTTTTTTTTTTGGTGTTAT8297288TTGTAGCCTTGTCCCAACTCAAAACAAGAATATTATCAATTACAAAACGA
Alitta virens genome assembly, chromosome: 6.
OW028578.1:31906706-31906725
TTGACTTGTATTAGCTACCAGAAAGCTTTC31906706TTGTAGCCTTGTCCCAACTCACAGAAATACTTTCCTCATGGTACAATAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAGTTGGGACAAGGCTACAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGTTGGGACAAGGCTACAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.238 | 0.230 | search_plus_done; http://172.18.8.135:50400/match?q=GAGTTGGGACAAGGCTACAA&k=0&no_gap=0&offset=0&limit=50
0.402 | 0.164 | search_minus_done; http://172.18.8.135:50400/match?q=TTGTAGCCTTGTCCCAACTC&k=0&no_gap=0&offset=0&limit=49
0.407 | 0.004 | cgi_end;

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