GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:48:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

fl_04B08_BG1 Md_fruit-leaf_subtractive_cDNA_library Malus domestica cDNA, mRNA sequence.
GD255078.1:73-93
GCGTGGCTCAGCGGCCGAGGATCAACTTCT73GATATCAAAGGCCCGAGAGTCTCTCCTCTCAGACATGGAGCGCAAAGATGA
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:18755612-18755632
TTTCTTACTGCCCCTTTAATTACAACTTCT18755612GATATCAAAGGCCCGAGAGTCTCTCCTCTCAGACATGGAGCGCAAAGATGA
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:19068620-19068640
TTTCTTACTGCCCCTTTAATTACAACTTCT19068620GATATCAAAGGCCCGAGAGTCTCTCCTCTCAGACATGGAGCGCAAAGATGA
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:18503515-18503535
TTTCTTACTGCCCCTTTAATTACAACTTCT18503515GATATCAAAGGCCCGAGAGTCTCTCCTCTCAGACATGGAGCGCAAAGATGA
Malus domestica genome assembly, chromosome: 10.
OU696686.1:18714941-18714961
TTTCTTACTGCCCCTTTAATTACAACTTCT18714941GATATCAAAGGCCCGAGAGTCTCTCCTCTCAGACATGGAGCGCAAAGATGA
Malus domestica genome assembly, chromosome: 10.
OU744551.1:18724253-18724273
TTTCTTACTGCCCCTTTAATTACAACTTCT18724253GATATCAAAGGCCCGAGAGTCTCTCCTCTCAGACATGGAGCGCAAAGATGA
Malus domestica genome assembly, chromosome: 10.
OU744962.1:19263540-19263560
TTTCTTACTGCCCCTTTAATTACAACTTCT19263540GATATCAAAGGCCCGAGAGTCTCTCCTCTCAGACATGGAGCGCAAAGATGA
Malus domestica genome assembly, chromosome: 10.
OU745000.1:18310820-18310840
TTTCTTACTGCCCCTTTAATTACAACTTCT18310820GATATCAAAGGCCCGAGAGTCTCTCCTCTCAGACATGGAGCGCAAAGATGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GATATCAAAGGCCCGAGAGTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GATATCAAAGGCCCGAGAGTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.282 | 0.273 | search_plus_done; http://172.18.8.135:50400/match?q=GATATCAAAGGCCCGAGAGTC&k=0&no_gap=0&offset=0&limit=50
0.377 | 0.095 | search_minus_done; http://172.18.8.135:50400/match?q=GACTCTCGGGCCTTTGATATC&k=0&no_gap=0&offset=0&limit=42
0.377 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).