GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 08:27:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a003G09_SP6.
AM385382.1:25-44
AAGATGCAATTTAGTTTCTTTATT25GATATGGCATCAAAGGCCCTCTAATTACATAAAAGAAAGTAAGTAAACGG
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a004G23_SP6.
AM385541.1:23-42
GATGCAATTTAGTTTCTTTATT23GATATGGCATCAAAGGCCCTCTAATTACATAAAAGAAAGTAAGTAAACGG
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a004N19_SP6.
AM385606.1:25-44
AAGATGCAATTTAGTTTCTTTATT25GATATGGCATCAAAGGCCCTCTAATTACATAAAAGAAAGTAAGTAAACGG
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a015G20_SP6.
AM387212.1:23-42
AATGCAATTTAGTTTCTTTATT23GATATGGCATCAAAGGCCCTCTAATTACATAAAAGAAAGTAAGTAAACGG
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a018A23_SP6.
AM387620.1:25-44
AAGATGCAATTTAGTTTCTTTATT25GATATGGCATCAAAGGCCCTCTAATTACATAAAAGAAAGTAAGTAAACGG
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a018I22_SP6.
AM387699.1:23-42
GATGCAATTTAGTTTCTTTATT23GATATGGCATCAAAGGCCCTCTAATTACATAAAAGAAAGTAAGTAAACGG
Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:46431330-46431349
TCATCTAAGATGCAATTTAGTTTCTTTATT46431330GATATGGCATCAAAGGCCCTCTAATTACATAAAAGAAAGTAAGTAAACGG
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a015G20_T7.
AM391108.1:209-228
CCGTTTACTTACTTTCTTTTATGTAATTAG209AGGGCCTTTGATGCCATATCAATAAAGAAACTAAATTGCATCTT
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a020E14_T7.
AM392141.1:381-400
CCGTTTACTTACTTTCTTTTATGTAATTAG381AGGGCCTTTGATGCCATATCAATAAAGAAACTAAATTGCATCTT
49RDOAT_UP_006_D12_28SEP2004_090 O. Alba 49RDOAT Brassica oleracea cDNA 5', mRNA sequence.
EE534168.1:220-239
CCGTTTACTTACTTTCTTTTATGTAATTAG220AGGGCCTTTGATGCCATATCAATAAAGAAACTAAATTGCATCTTAAAAAA
1106162274876 Cryptosporidium muris (strain RN66) cDNA library, stage oocyst Cryptosporidium muris RN66 cDNA clone 1061038766024, mRNA sequence.
FD394354.1:794-813
CCGTTTACTTACTTTCTTTTATGTAATTAG794AGGGCCTTTGATGCCATATCAATAAAGAAACTAAATTGCATCTTATAAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GATATGGCATCAAAGGCCCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GATATGGCATCAAAGGCCCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.129 | 0.120 | search_plus_done; http://172.18.8.135:50400/match?q=GATATGGCATCAAAGGCCCT&k=0&no_gap=0&offset=0&limit=50
0.284 | 0.155 | search_minus_done; http://172.18.8.135:50400/match?q=AGGGCCTTTGATGCCATATC&k=0&no_gap=0&offset=0&limit=43
0.287 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).