GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 06:34:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

PUAAC68TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa001L15, genomic survey sequence.
BZ632797.1:289-308
AGTGGCATGGACCCTCACATGATTAGTTAA289GATATGGTTTGGTTGGTCGTTATATATTTGTGGTTTGATGAAAGATCCTT
Zea mays cultivar B73 chromosome 1 clone CH201-311F16, *** SEQUENCING IN PROGRESS ***, 24 unordered pieces.
AC207106.4:64452-64471
AGTGGCATGGACCCTCACATGATTAGTTAA64452GATATGGTTTGGTTGGTCGTTATATATTTGTGGTTTGATGAAAGATCCTT
Sequence 56627 from Patent WO2014036048.
JC806252.1:344-363
AAGGATCTTTCATCAAACCACAAATATATA344ACGACCAACCAAACCATATCTTAACTAATCATGTGAGGGTCCATGCCACT
PUAAC68TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa001L15, genomic survey sequence.
BZ632794.1:376-395
AAGGATCTTTCATCAAACCACAAATATATA376ACGACCAACCAAACCATATCTTAACTAATCATGTGAGGGTCCATGCCACT
PUGEO11TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa366B21, genomic survey sequence.
BZ803428.1:705-724
AAGGATCTTTCATCAAACCACAAATATATA705ACGACCAACCAAACCATATCTTAACTAATCATGTGAGGGTCCATGCCACT
PUDDU01TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa164B01, genomic survey sequence.
BZ993056.1:346-365
AAGGATCTTTCATCAAACCACAAATATATA346ACGACCAACCAAACCATATCTTAACTAATCATGTGAGGGTCCATGCCACT
PUFKM37TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa0671G01, genomic survey sequence.
CG126762.1:204-223
AAGGATCTTTCATCAAACCACAAATATATA204ACGACCAACCAAACCATATCTTAACTAATCATGTGAGGGTCCATGCCACT
Zea mays cultivar LT2357 chromosome 1.
CP116739.1:259073605-259073624
AAGGATCTTTCATCAAACCACAAATATATA259073605ACGACCAACCAAACCATATCTTAACTAATCATGTGAGGGTCCATGTCGCT
Cucumis melo isolate PI 511890 chromosome 2.
CP136103.1:851426-851445
AATATATATATATATATGGGGAAAACTAGG851426ACGACCAACCAAACCATATCCCCCAAACATTGGAAAGTGTAGTTGTTTGT
Cucumis melo genomic scaffold, anchoredscaffold00025.
LN681806.1:842135-842154
AAATATATATATATATATGAGAAAACTAGG842135ACGACCAACCAAACCATATCCCCCAAACATTGGAAAGTGTAGTTGTTTGT
Cucumis melo genomic chromosome, chr_2.
LN713256.1:842135-842154
AAATATATATATATATATGAGAAAACTAGG842135ACGACCAACCAAACCATATCCCCCAAACATTGGAAAGTGTAGTTGTTTGT
Zea mays genome assembly, chromosome: 1.
LR897967.1:264633803-264633822
AAGGATCTTTCATCAAACCACAAATATATA264633803ACGACCAACCAAACCATATCTTAACTAATCATGTGAGGGTCCATGCCACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GATATGGTTTGGTTGGTCGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GATATGGTTTGGTTGGTCGT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.099 | 0.091 | search_plus_done; http://172.18.8.135:50400/match?q=GATATGGTTTGGTTGGTCGT&k=0&no_gap=0&offset=0&limit=50
0.192 | 0.093 | search_minus_done; http://172.18.8.135:50400/match?q=ACGACCAACCAAACCATATC&k=0&no_gap=0&offset=0&limit=48
0.199 | 0.006 | cgi_end;

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