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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-17 00:20:22, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

ML305 peppermint glandular trichome Mentha x piperita cDNA, mRNA sequence.
AW255297.1:16-39
ACAAGATCAGCTAGA16GATCAAGTTTAGGTTAACTGATGGCTCGGATATCGGGCCGAGAAACTTTCCTGT
BNYS2DCT_UP_009_H11_28FEB2005_081 Brassica napus seeds BNYS2DCT Brassica napus cDNA 5', mRNA sequence.
EE474151.1:286-309
AGACATGGCAGAAGTTGATAATCAACTAGA286GATCAAGTTTAGGTTAACTGATGGTTCTGATATCGGCCCTAAAGCATTTCCTGA
BMSA01-T7-21-G05 Brassica napus Full-length cDNA Library Brassica napus cDNA, mRNA sequence.
EG021235.1:233-256
AGACATGGCAGAAGTTGATAATCAACTAGA233GATCAAGTTTAGGTTAACTGATGGTTCTGATATCGGCCCTAAAGCATTTCCTGA
RS2AT38TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EW725544.1:201-224
AGAGATGGCAGAAGTTGATAATCAACTAGA201GATCAAGTTTAGGTTAACTGATGGTTCTGATATCGGCCCTAAAGTATTTTCTGA
RR1CK96TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EX749250.1:313-336
AGAGATGGCAGAAGTTGATAATCAACTAGA313GATCAAGTTTAGGTTAACTGATGGTTCTGATATCGGCCCAAAAGCATTTCCTGA
RS2C341TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EX896185.1:170-193
AGAGATGGCAGAAGTTGATAATCAACTAGA170GATCAAGTTTAGGTTAACTGATGGTTCTGATATCGGCCCTAAAGCATTTTCTGA
RR1D755TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EY897333.1:292-315
AGAGATGGCAGAAGTTGATAATCAACTAGA292GATCAAGTTTAGGTTAACTGATGGTTCTGATATCGGCCCAAAAGCATTTCCTGA
RS1FF94TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD563729.1:233-256
AGAGATGGCAGAAGTTGATAATCAACTAGA233GATCAAGTTTAGGTTAACTGATGGTTCTGATATCGGCCCTAAAGCATTTCCTGA
RS3GM77TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
FD956605.1:294-317
AGAGATGGCAGAAGTTGATAATCAACTAGA294GATCAAGTTTAGGTTAACTGATGGTTCTGATATCGGCCCTAAAGCATTTCCTGA
BNAPO1GH_T3_007_F05_14JUN2007_037 BNAPO1GH Brassica napus cDNA 5', mRNA sequence.
GR450746.1:141-164
AGACATGGCAGAAGTTGATAATCAACTAGA141GATCAAGTTTAGGTTAACTGATGGTTCTGATATCGGCCCTAAAGCATTTCCTGA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_15115.
FX670465.1:325-348
AGAGATGGCAGAAGTTGATAATCAACTAGA325GATCAAGTTTAGGTTAACTGATGGTTCTGATATCGGCCCTAAAGCATTTCCTGA
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:55545156-55545179
AGACATGGCAGAAGTTGATAATCAACTAGA55545156GATCAAGTTTAGGTTAACTGATGGTTCTGATATCGGCCCTAAAGCATTTCCTGA
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:43874785-43874808
AGAGATGGCAGAAGTTGATAATCAACTAGA43874785GATCAAGTTTAGGTTAACTGATGGTTCTGATATCGGCCCTAAAGCATTTCCTGA
RS2AT38JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EW730825.1:540-563
TCAGAAAATACTTTAGGGCCGATATCAGAA540CCATCAGTTAACCTAAACTTGATCTCTAGTTGATTATCAACTTCTGCCATCTCT
RR1CK96JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EX752991.1:470-493
TCAGGAAATGCTTTTGGGCCGATATCAAAA470CCATCAGTTAACCTAAACTTGATCTCTAGTTGATTATCAACTTCTGCCATCTCT
RS2C341JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EX900149.1:460-483
TCAGAAAATGCTTTAGGGCCGATATCAGAA460CCATCAGTTAACCTAAACTTGATCTCTAGTTGATTATCAACTTCTGCCATCTCT
RR1D755JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EY893684.1:460-483
TCAGGAAATGCTTTTGGGCCGATATCAGAA460CCATCAGTTAACCTAAACTTGATCTCTAGTTGATTATCAACTTCTGCCATCTCT
RS1FF94JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
FD567395.1:571-594
TCAGGAAATGCTTTAGGGCCGATATCAGAA571CCATCAGTTAACCTAAACTTGATCTCTAGTTGATTATCAACTTCTGCCATCTCT
RS3GM77JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
FD952458.1:460-483
TCAGGAAATGCTTTAGGGCCGATATCAGAA460CCATCAGTTAACCTAAACTTGATCTCTAGTTGATTATCAACTTCTGCCATCTCT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_45854.
FX775494.1:337-360
TCAGGAAATGCTTTAGGGCCGATATCAGAA337CCATCAGTTAACCTAAACTTGATCTCTAGTTGATTATCAACTTCTGCCATCTCT
TSA: Raphanus sativus RS09842 mRNA sequence.
JT794389.1:388-411
TCAGGAAATGCTTTAGGGCCGATATCAGAA388CCATCAGTTAACCTAAACTTGATCTCTAGTTGATTATCAACTTCTGCCATCTCT
Brassica napus cultivar Xiang5A chromosome 13.
CP151908.1:23659107-23659130
TCAGGAAATGCTTTAGGGCCGATATCAGAA23659107CCATCAGTTAACCTAAACTTGATCTCTAGTTGATTATCAACTTCTGCCATGTCT
Mentha suaveolens isolate 85 chromosome 6.
CP159499.1:28703985-28704008
ACAGGAAAGTTTCTCGGCCCGATATCCGAG28703985CCATCAGTTAACCTAAACTTGATCTCTAGCTGATCTTGTGCTTCAGACATCTTC
Brassica napus genome assembly, chromosome: C03.
HG994367.1:23642099-23642122
TCAGGAAATGCTTTAGGGCCGATATCAGAA23642099CCATCAGTTAACCTAAACTTGATCTCTAGTTGATTATCAACTTCTGCCATGTCT
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:158161-158184
TCAGGAAATGCTTTAGGGCCGATATCAGAA158161CCATCAGTTAACCTAAACTTGATCTCTAGTTGATTATCAACTTCTGCCATCTCT
Brassica nigra genome assembly, chromosome: 7.
OZ173177.1:16012938-16012961
TCAGGAAATGCTTTAGGGCCAATATCAGAA16012938CCATCAGTTAACCTAAACTTGATCTCTAGTTGATTTTCAACTTCTGCCATCTCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GATCAAGTTTAGGTTAACTGATGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GATCAAGTTTAGGTTAACTGATGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.741 | 0.732 | search_plus_done; http://172.18.8.135:50800/match?q=GATCAAGTTTAGGTTAACTGATGG&k=0&no_gap=0&offset=0&limit=50
1.165 | 0.424 | search_minus_done; http://172.18.8.135:50800/match?q=CCATCAGTTAACCTAAACTTGATC&k=0&no_gap=0&offset=0&limit=37
1.174 | 0.009 | cgi_end;

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