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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-05 21:39:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

CAYY19285.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens cDNA clone CAYY19285 5', mRNA sequence.
FC338691.1:18-37
GAAGATTATGAAGGCAG18ACGAAGACGTCCGAATGATCTCTGCAGAAGCACCAGTCCTTTTTGCAAAA
CAYY24721.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens cDNA clone CAYY24721 5', mRNA sequence.
FC347794.1:429-448
TTGCGCGCATCAAGAAGATTATGAAGGCAG429ACGAAGACGTCCGAATGATCTCTGCAGAAGCACCAGTCCTTTTTGCAAAA
Camellia sinensis mRNA, clone: TB21H10, 5' end sequence, expressed in terminal buds.
FS955967.1:252-271
TGGCTCGCATCAAGAAGATCATGAAAGCCG252ACGAAGACGTCCGAATGATCTCCGCCGAAGCCCCAATGCTCTTTTCCAAG
Dianthus caryophyllus mRNA, clone: CES03N03, 5' end sequence.
FY383535.1:288-307
TCGCGAGAATCAAGAAAATCATGAAAGCCG288ACGAAGACGTCCGAATGATCTCCGCAGAAGCCCCGATTTTGTTCGCCAAA
Dianthus caryophyllus mRNA, clone: CES09H20, 5' end sequence.
FY385689.1:252-271
TCGCGAGAATCAAGAAAATCATGAAAGCCG252ACGAAGACGTCCGAATGATCTCCGCAGAAGCCCCGATTTTGTTCGCCAAA
Dianthus caryophyllus mRNA, clone: CES16B20, 5' end sequence.
FY388195.1:308-327
TCGCGAGAATCAAGAAAATCATGAAAGCCG308ACGAAGACGTCCGAATGATCTCCGCAGAAGCCCCGATTTTGTTCGCCAAA
Dianthus caryophyllus mRNA, clone: CES16H23, 5' end sequence.
FY388339.1:301-320
TCGCGAGAATCAAGAAAATCATGAAAGCCG301ACGAAGACGTCCGAATGATCTCCGCAGAAGCCCCGATTTTGTTCGCCAAA
Dianthus caryophyllus mRNA, clone: CES18D17, 5' end sequence.
FY388990.1:316-335
TCGCGAGAATCAAGAAAATCATGAAAGCCG316ACGAAGACGTCCGAATGATCTCCGCAGAAGCCCCGATTTTGTTCGCCAAA
Dianthus caryophyllus mRNA, clone: CFES08N11, 5' end sequence.
FY397134.1:333-352
TCGCGAGAATCAAGAAAATCATGAAAGCCG333ACGAAGACGTCCGAATGATCTCCGCAGAAGCCCCGATTTTGTTCGCCAAA
Dianthus caryophyllus mRNA, clone: CFES24_H24, 5' end sequence.
FY403005.1:292-311
TCGCGAGAATCAAGAAAATCATGAAAGCCG292ACGAAGACGTCCGAATGATCTCCGCAGAAGCCCCGATTTTGTTCGCCAAA
Dianthus caryophyllus mRNA, clone: CFES26J24, 5' end sequence.
FY403804.1:335-354
TCGCGAGAATCAAGAAAATCATGAAAGCCG335ACGAAGACGTCCGAATGATCTCCGCAGAAGCCCCGATTTTGTTCGCCAAA
TSA: Dianthus caryophyllus mRNA, contig: CAK09.164.C1.
FX296811.1:333-352
TCGCGAGAATCAAGAAAATCATGAAAGCCG333ACGAAGACGTCCGAATGATCTCCGCAGAAGCCCCGATTTTGTTCGCCAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GATCATTCGGACGTCTTCGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GATCATTCGGACGTCTTCGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.230 | 0.221 | search_plus_done; http://172.18.8.135:50400/match?q=GATCATTCGGACGTCTTCGT&k=0&no_gap=0&offset=0&limit=50
1.039 | 0.809 | search_minus_done; http://172.18.8.135:50400/match?q=ACGAAGACGTCCGAATGATC&k=0&no_gap=0&offset=0&limit=50
1.047 | 0.008 | cgi_end;

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