GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 10:34:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

A014P67U Hybrid aspen plasmid library Populus tremula x Populus tremuloides cDNA 5', mRNA sequence.
AI162252.1:98-119
GGGTTGTTTCTAGATCTACTGCGGGAAAGA98GATCTCCTCCAACACCAGAAAATATTGATAGAAAGTTGCCTAGCTCTAGGTC
Populus euphratica EST, clone P0001600012H06F1.
AJ771974.1:152-173
AGGTTGTTTCTAGATCTACTGCAGGAAAGA152GATCTCCTCCAACACCAGAAAATATTGATAGAAAGATGCCTAGCTCTAGGTC
WS02524.B21_C01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02524_C01 3', mRNA sequence.
DT483984.1:383-404
AGGTTGTTTCTAGATCTACTGTAGGAAAGA383GATCTCCTCCAACACCAGAAAATATTGATAGAAAGATGTCTGGCTCTAGATC
Populus trichocarpa clone POP019-I06, complete sequence.
AC216596.1:3232-3253
AGGTTGTTTCTAGATCTACTGCAGGAAAGA3232GATCTCCTCCAACACCAGAAAATATTGATAGAAAGATGCCTAGCTCTAGGTC
Populus nigra genome assembly, chromosome: 1.
OX637672.1:44172298-44172319
AGGTTGTTTCTAGATCTACTGCAGGAAAGA44172298GATCTCCTCCAACACCAGAAAATATTGATAGAAAGATGCCTAGCTCTAGGTC
Populus nigra genome assembly, chromosome: 8.
OX637679.1:17071863-17071884
GGGTTGTTTCTAGATCTACTGCAGGAAAGA17071863GATCTCCTCCAACACCAGAAAATATTGATAGAAAGATGCCTAGCTCTAGGTC
WS02524.BR_C01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02524_C01 5', mRNA sequence.
DT478897.1:515-536
ATCTAGAGCCCGACATTCTTTCTATCAATA515TTTTCTGGTGTTGGAGGAGATCTCTTTCCTACAGTAGATTCTAGAAACAACC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GATCTCCTCCAACACCAGAAAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GATCTCCTCCAACACCAGAAAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.141 | 0.132 | search_plus_done; http://172.18.8.135:50400/match?q=GATCTCCTCCAACACCAGAAAA&k=0&no_gap=0&offset=0&limit=50
0.201 | 0.060 | search_minus_done; http://172.18.8.135:50400/match?q=TTTTCTGGTGTTGGAGGAGATC&k=0&no_gap=0&offset=0&limit=44
0.202 | 0.001 | cgi_end;

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