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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:07:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Camellia sinensis mRNA, clone: LR19C03, 5' end sequence, expressed in lateral roots.
FS944744.1:520-539
ATTCTTCGCCGCAGCAACATTGTTGCTTTA520GATCTGATATCTGGAGTTTGTTTTCTTCATTTTGATCGAGATGAAGATTC
Camellia sinensis mRNA, clone: RT5E01, unspecified EST, sequenced using T7 primer, expressed in roots.
FS951557.1:498-517
ATTCTTCGCCGCAGCAACATTGTTGCTTTA498GATCTGATATCTGGAGTTTGTTTTCTTC
Camellia sinensis mRNA, clone: TB09C06, 5' end sequence, expressed in terminal buds.
FS955040.1:493-512
ATTCTTCGCCGCAGCAACATTGTTGCTTTA493GATCTGATATCTGGAGTTTGTTTTCTTCATTTTGATCGAGATGAAGATTC
EST2115 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_22_47.M13+_G06.ab1, mRNA sequence.
GE651788.1:548-567
ATTCTTCGCCGCAGCAACATTGTTGCTTTA548GATCTGATATCTGGAGTTTGTTTTCTTCATTTTGATCGAGATGTAGATTC
EST2316 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_25_20.M13+_D03.ab1, mRNA sequence.
GE651989.1:561-580
ATTCTTCGCCGCAGCAACATTGTTGCTTTA561GATCTGATATCTGGAGTTTGTTTTCTTCATTTTGATCGAGATGAAGATTC
EST2403 Tender roots cDNA library of tea plant Camellia sinensis cDNA clone 07102311-CHAG_26_42.M13+_B06.ab1, mRNA sequence.
GE652076.1:539-558
ATTCTTCGCCGCAGCAACATTGTTGCTTTA539GATCTGATATCTGGAGTTTGTTTTCTTCATTTTGATCGAGATGAAGATTC
TSA: Camellia sinensis tea_rep_c8428 mRNA sequence.
KA287802.1:486-505
ATTCTTCGCCGCAGCAACATTGTTGCTTTA486GATCTGATATCTGGAGTTTGTTTTCTTCATTTTGATCGAGATGAAGATTC
Hordeum bulbosum genome assembly, chromosome: 3H_1.
OY737642.1:289234531-289234550
ACGATAAATCATAACATGCTCCTTTGACCA289234531GATCTGATATCTGGAGTTTGGTTTGGGAGGGAGCTGTTCATCGTTGTAGG
Camellia sinensis mRNA, clone: RT29A08, unspecified EST, sequenced using SP6 primer, expressed in roots.
FS950535.1:239-258
GAATCTTCATCTCGATCAAAATGAAGAAAA239CAAACTCCAGATATCAGATCTAAAGCAACAATGTTGCTGCGGCGAAGAAT
Camellia sinensis mRNA, clone: RT5E01, unspecified EST, sequenced using SP6 primer, expressed in roots.
FS951556.1:246-265
GAATCTTCATCTCGATCAAAATGAAGAAAA246CAAACTCCAGATATCAGATCTAAAGCAACAATGTTGCTGCGGCGAAGAAT
TSA: Camellia sinensis tea_rep_c24035 mRNA sequence.
KA302406.1:105-124
GAATCTTCATCTCGATCAAAATGAAGAAAA105CAAACTCCAGATATCAGATCTAAAGCAACAATGTTGCTGCGGCGAAGAAT
Secale cereale genome assembly, chromosome: 2R.
LR738710.1:359353695-359353714
GTTGAATCATATTTCTCCAAAGGTCATCAG359353695CAAACTCCAGATATCAGATCCAGAGCACAAGGTTACTGGCACGTTCCAAG
Membranipora membranacea genome assembly, chromosome: 2.
OU612066.1:7749862-7749881
AATCATATTGTATCTTACCATAGAAATGCC7749862CAAACTCCAGATATCAGATCGAATGTCAAAACCCTTACATCCAGGTGGTG
Drymonia ruficornis genome assembly, chromosome: 11.
OX401915.1:9905753-9905772
CTAAATCAATATCTCAGAATATTAATAATT9905753CAAACTCCAGATATCAGATCGTTCACCAAAACAGGTGTTCGGAATTAGTA
Tolmerus cingulatus genome assembly, chromosome: 1.
OY390707.1:32439165-32439184
CATTCAGAAAGAAGCAGCCCGCAGTGCTCG32439165CAAACTCCAGATATCAGATCTCAACATCTCCCAGGCGAAGAGCAGGACAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GATCTGATATCTGGAGTTTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GATCTGATATCTGGAGTTTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.763 | 0.755 | search_plus_done; http://172.18.8.135:50400/match?q=GATCTGATATCTGGAGTTTG&k=0&no_gap=0&offset=0&limit=50
1.062 | 0.299 | search_minus_done; http://172.18.8.135:50400/match?q=CAAACTCCAGATATCAGATC&k=0&no_gap=0&offset=0&limit=42
1.067 | 0.005 | cgi_end;

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