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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 21:01:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RS1H102JQB RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
FD937070.1:381-400
ATTCATCATCATCACTTTGCTGTCGCCACG381GATCTTAAGCTCGGTCGTCGTCATCATCTACACTCGCCGCCGTCATCCTT
Raphanus sativus mRNA, clone: RSCS02M08, 5' end sequence.
FY446811.1:73-92
GATCATCGTCATCACTTTGCTGTCGCCACG73GATCTTAAGCTCGGTCGTCGTCATCATCTACACTCGCCGCCGTCATCCTT
TSA: Raphanus sativus RS15012 mRNA sequence.
JT799559.1:65-84
ATTCATCGTCATCACTTTGCTGTCGCCACG65GATCTTAAGCTCGGTCGTCGTCATCATCTACACTCGCCGCCGTCATCCTT
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:23243657-23243676
ATTCATCATCATCACTTTGCTGTCGCCACG23243657GATCTTAAGCTCGGTCGTCGTCATCATCTACACTCGCCGCCATCATCCTT
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:7835033-7835052
ATTCATCATCATCACTTTGCTGTCGCCACG7835033GATCTTAAGCTCGGTCGTCGTCATCATCTACACTCGCCGCCGTCATCCTT
Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:23809654-23809673
ATTCATAATCATCACTTTGCTATCGCCACG23809654GATCTTAAGCTCGGTCGTCGTCATCATCTACACTCGCCCCCGTCATCCTT
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:23243657-23243676
ATTCATCATCATCACTTTGCTGTCGCCACG23243657GATCTTAAGCTCGGTCGTCGTCATCATCTACACTCGCCGCCATCATCCTT
RS1H102TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD941428.1:352-371
AAGGATGACGGCGGCGAGTGTAGATGATGA352CGACGACCGAGCTTAAGATCCGTGGCGACAGCAAAGTGATGATGATGAAT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_32446.
FX795472.1:368-387
AAGGATGACGGGGGCGAGTGTAGATGATGA368CGACGACCGAGCTTAAGATCCGTGGCGATAGCAAAGTGATGATTATGAAT
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:45815468-45815487
AAGGATGACGGCGGCGAGTGTAGATGATGA45815468CGACGACCGAGCTTAAGATCCGTGGCGACAGCAAAGTGATGATGATGAAT
Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:20223296-20223315
AAGGATGACGGGGGCGAGTGTAGATGATGA20223296CGACGACCGAGCTTAAGATCCGTGGCGATAGCAAAGTGATGATTATGAAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GATCTTAAGCTCGGTCGTCG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GATCTTAAGCTCGGTCGTCG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.536 | 0.527 | search_plus_done; http://172.18.8.135:50400/match?q=GATCTTAAGCTCGGTCGTCG&k=0&no_gap=0&offset=0&limit=50
0.719 | 0.183 | search_minus_done; http://172.18.8.135:50400/match?q=CGACGACCGAGCTTAAGATC&k=0&no_gap=0&offset=0&limit=43
0.721 | 0.003 | cgi_end;

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