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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 07:03:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

EST435704 tomato developing/immature green fruit Solanum lycopersicum cDNA clone cLEM18D9 5' sequence, mRNA sequence.
BF050546.1:313-339
ATATCATGTGGGGTCTTTGGATATCCTTAT313GATGAAGCTGCCACTGTAGCTATATCTACTGTCAAAGAATTTGGCAGTGACCTTAAA
Solanum lycopersicum cDNA, clone: FC08BA01, 5' end, expressed in fruit.
BW687119.1:698-724
ATATCATGTGGGGTCTTTGGATATCCTTAT698GATGAAGCTGCCACTGTAGCTATATCTACTGTCAAAGAATTTGGCAGTGACCTTAAA
Solanum lycopersicum cDNA, clone: LEFL3024D23, 5' end sequence in root.
FS182692.1:502-528
ATATCNNNNNGGGTCTTTGGATATCCTTAT502GATGAAGCTGCCACTGTAGCTATATCTACTGTCAAAGAATTTGGCAGTGACCTTAAA
Solanum lycopersicum cultivar Heinz 1706 chromosome 5 clone C05HBa0138J03, complete sequence.
AC196876.2:72618-72644
TATTTTTTTGTACTTCCCAGATATCCTTAT72618GATGAAGCTGCCACTGTAGCTATATCTACTGTCAAAGAATTTGGCAGTGACCTTAAA
Solanum lycopersicum Micro-Tom DNA, chromosome 5, draft genome sequence.
AP028939.1:65792783-65792809
TATTTTTTTGTACTTCCCAGATATCCTTAT65792783GATGAAGCTGCCACTGTAGCTATATCTACTGTCAAAGAATTTGGCAGTGACCTTAAA
Solanum lycopersicum cultivar I-3 chromosome 5.
CP023761.1:62528700-62528726
TATTTTTTTGTACTTCCCAGATATCCTTAT62528700GATGAAGCTGCCACTGTAGCTATATCTACTGTCAAAGAATTTGGCAGTGACCTTAAA
Solanum lycopersicum chromosome ch05, complete genome.
HG975517.1:61675999-61676025
TATTTTTTTGTACTTCCCAGATATCCTTAT61675999GATGAAGCTGCCACTGTAGCTATATCTACTGTCAAAGAATTTGGCAGTGACCTTAAA
Solanum lycopersicum genome assembly, chromosome: 5.
OU640348.1:63418064-63418090
TATTTTTTTGTACTTCCCAGATATCCTTAT63418064GATGAAGCTGCCACTGTAGCTATATCTACTGTCAAAGAATTTGGCAGTGACCTTAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GATGAAGCTGCCACTGTAGCTATATCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GATGAAGCTGCCACTGTAGCTATATCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.329 | 0.320 | search_plus_done; http://172.18.8.135:50400/match?q=GATGAAGCTGCCACTGTAGCTATATCT&k=0&no_gap=0&offset=0&limit=50
0.392 | 0.064 | search_minus_done; http://172.18.8.135:50400/match?q=AGATATAGCTACAGTGGCAGCTTCATC&k=0&no_gap=0&offset=0&limit=42
0.392 | 0.000 | cgi_end;

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