GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-15 07:23:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:43505444-43505465
AAGTAGTTTCTTAACTTTCTAGGCAAGTAA43505444GATGAAGGGAGTGTCTTCGGATACGTCTCTTAACATTTTTGATGCTCTGTAC
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:43505444-43505465
AAGTAGTTTCTTAACTTTCTAGGCAAGTAA43505444GATGAAGGGAGTGTCTTCGGATACGTCTCTTAACATTTTTGATGCTCTGTAC
RS2A206JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EW727379.1:44-65
GTACAGAGCATCAAAAAAGTTAAGAGACGT44ATCCGAAGACACTCCCTTCATCTTACTTGCCTAGAAAGTTAAGAAACTACTT
RR2E528JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EY903990.1:90-111
GTACAGAGCATCAAAAATGTTAAGAGACGT90ATCCGAAGACACTCCCTTCATCTTACTTGCCTAGAAAGTTAAGAAACTACTT
RS2EL96JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EY937271.1:77-98
GTACAGAGCATCAAAAATGTTAAGAGACGT77ATCCGAAGACACTCCCTTCATCTTACTTGCCTAGAAAGTTAAGAAACTACTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GATGAAGGGAGTGTCTTCGGAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GATGAAGGGAGTGTCTTCGGAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.105 | 0.096 | search_plus_done; http://172.18.8.135:50400/match?q=GATGAAGGGAGTGTCTTCGGAT&k=0&no_gap=0&offset=0&limit=50
0.369 | 0.264 | search_minus_done; http://172.18.8.135:50400/match?q=ATCCGAAGACACTCCCTTCATC&k=0&no_gap=0&offset=0&limit=48
0.371 | 0.002 | cgi_end;

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