GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-07 07:37:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Acomys kempi genome assembly, chromosome: 3.
OU015357.1:97573722-97573741
TTCTGTTAGAGCTGGTGGGTAAGAGAAAGG97573722GATGAGGTGGTGGAGGAAGACCGTAGGAGAAGAGCTGCTCCATGTGCTGG
Felis catus Senzu DNA, chromosome: C2, American Shorthair breed.
AP023160.1:36210996-36211015
AGTGTTAAAAAGGAGAAGAAAAAGAAGAAA36210996GATGAGGTGGTGGAGGAAGAGGAGGAGGAGACTATGGGATCATGTCAAAA
Lutra lutra genome assembly, chromosome: 5.
LR738407.1:102434225-102434244
AAGGAGGAGGAGGTAGAGGCAGAGCAAGGA102434225GATGAGGTGGTGGAGGAAGAAGATCAATGAAACTTAAAGCCAGTTGTTTG
Danio rerio strain T5D chromosome 15.
CP068749.1:37256994-37257013
ATAGAGGAAGACGATATGGAGGAGGAAGAG37256994GATGAGGTGGTGGAGGAAGAAGCAGAGGAGGAAGAGGAGGAGGAAGAGGA
Furcifer pardalis isolate Fpa_1 chromosome 1.
CP126890.1:243193032-243193051
TTGGCTCCTGTTTGAAAGTGCCTTAGACTA243193032GATGAGGTGGTGGAGGAAGAAATGTTCACCATTTACGTTGAAGCATTAGG
Danio rerio strain Tubingen chromosome 15.
CP137028.1:40276063-40276082
ATCGAGGAAGACGATATGGAGGAGGAAGAG40276063GATGAGGTGGTGGAGGAAGAAGCAGAGGAGGAAGAGGAGGAGGAAGAGGA
Zebrafish DNA sequence from clone CH211-147F13.
CR848749.13:48565-48584
ATCGAGGAAGACGATATGGAGGAGGAAGAG48565GATGAGGTGGTGGAGGAAGAAGCAGAGGAGGAAGAGGAGGAGGAAGAGGA
Salmo trutta genome assembly, chromosome: 35.
LR584444.1:32247174-32247193
ATTGCTGGGCCAATGGAAGAGGAGGAGCTG32247174GATGAGGTGGTGGAGGAAGAGGAGGAGGCCGAGGAGGACGGTGTGAGGTT
Sphaeramia orbicularis genome assembly, chromosome: 9.
LR597466.1:36026323-36026342
AAGGTGGCGAAGCGGCAGAAGAAGGATGAG36026323GATGAGGTGGTGGAGGAAGAAGAGAACGTCCAGCCTGTGGTGGATCCCCT
Danio rerio genome assembly, chromosome: 15.
LR812052.1:37990337-37990356
ATCGAGGAAGACGATATGGAGGAGGAAGAG37990337GATGAGGTGGTGGAGGAAGAAGCAGAGGAGGAAGAGGAGGAGGAAGAGGA
Danio rerio genome assembly, chromosome: 15.
LR812077.1:37401446-37401465
ATCGAGGAAGACGATATGGAGGAGGAAGAG37401446GATGAGGTGGTGGAGGAAGAAGCAGAGGAGGAAGAGGAGGAGGAAGAGGA
Danio kyathit genome assembly, chromosome: 15.
LR812533.1:43988075-43988094
ATCGAGGAAGACGACATGGAGGAGGAAGAG43988075GATGAGGTGGTGGAGGAAGAAGCAGAGGAGGAAGAGGAGGAGGAAGAGGA
Danio rerio strain Cooch Behar (CB) genome assembly, chromosome: 15.
LR812558.1:36593255-36593274
ATCGAGGAAGACGATATGGAGGAGGAAGAG36593255GATGAGGTGGTGGAGGAAGAAGCAGAGGAGGAAGAGGAGGAGGAAGAGGA
Bufo bufo genome assembly, chromosome: 5.
LR991671.1:134004437-134004456
ATGGAGGACGAAGAGGCGATTGAAGAGGTG134004437GATGAGGTGGTGGAGGAAGACCAGGAGGGAGAAATGAAAGTGAATAACGT
Thunnus maccoyii genome assembly, chromosome: 10.
OU343200.1:19254769-19254788
ATGGACGAAGCCGATATGGAAGAAGAAGAT19254769GATGAGGTGGTGGAGGAAGAGGAGGAGGAAGAGGAGGAGGAGGAAGTTGA
Danio rerio genome assembly, chromosome: 15.
OX063304.1:39788948-39788967
ATCGAGGAAGACGATATGGAGGAGGAAGAG39788948GATGAGGTGGTGGAGGAAGAAGCAGAGGAGGAAGAGGAGGAGGAAGAGGA
Thunnus thynnus genome assembly, chromosome: 10.
OZ004741.1:19139707-19139726
ATGGACGAAGCCGATATGGAAGAAGAAGAT19139707GATGAGGTGGTGGAGGAAGAGGAGGAGGAAGAGGAGGAGGAAGTTGATGA
uncultured Draconibacterium sp. isolate 4c65993c-4161-4ec7-8ef5-d127b450959c genome assembly, chromosome: 1.
OY775899.1:1063917-1063936
TACGTATCGCGGCCGGGCGAAGAACCCGAT1063917GATGAGGTGGTGGAGGAAGATTGATTCTGCCGCATCTTCTGAAAATTAAA
uncultured Draconibacterium sp. isolate 9e586ed7-936f-4555-a8db-c19e59aca8b3 genome assembly, chromosome: 1.
OY781365.1:2986177-2986196
TACGTATCGCGGCCGGGCGAAGAACCCGAT2986177GATGAGGTGGTGGAGGAAGATTGATTCTGCCGCATCTTCTGAAAATTAAA
fj55h01.y1 zebrafish adult brain Danio rerio cDNA 5' similar to TR:Q91963 Q91963 APP747.; contains element PTR5 repetitive element, mRNA sequence.
AW281421.1:472-491
ATCGAGGAAGACGATATGGAGGAGGAAGAG472GATGAGGTGGTGGAGGAAGA
Dianthus caryophyllus mRNA, clone: CES25_B20, 5' end sequence.
FY391580.1:742-761
TCCTGACCAAAGACGGTCATAGCAGTGGTT742GATGAGGTGGTGGAGGAAGAGTACGACGAGTACGTCGAGGGTTGCTG
Brachypodium distachyon mRNA, clone: PL016C01-A-028_G03, 5' end sequence.
HX799738.1:533-552
GGCGGCGAGGACGAGGAGAAGAAGGGCGTG533GATGAGGTGGTGGAGGAAGACGAGGACATGAGGGAGGCGTTCCGGGTGTT
TSA: Ictalurus punctatus clc_366586 mRNA sequence.
JT400328.1:393-412
ATGCTGGACCCGTCTTCGAGCGAGGAGGAA393GATGAGGTGGTGGAGGAAGAGCGCAAAGCGGCGGTGGTGGCGCCTCCAAA
Rattus norvegicus clone CH230-497M8, WORKING DRAFT SEQUENCE, 5 unordered pieces.
AC128224.4:162933-162952
AAGAAGAAGGAGAAGGAGGAGGAAGTGGAG162933GATGAGGTGGTGGAGGAAGAGGAAGAGGAGGAGGAGGAGAACAAGAAGAA
Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
AP015037.1:7472439-7472458
AAGATAGGTAAAGATGGAGGAAAGTATGGA7472439GATGAGGTGGTGGAGGAAGAGGAAAGAAGATGAAGGTAATTTTGTCTTTT
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-10.
CP023122.1:14794453-14794472
CACCCTGGACCATTCGGTGGATTGGGCAAC14794453GATGAGGTGGTGGAGGAAGAAGACGATGACTGTGTAGAGTTAATTTGCAT
Cryptococcus wingfieldii strain CBS7118 chromosome 8, complete sequence.
CP034268.1:1441333-1441352
TTAAGGGCTGGGCAGGAGGAGATCTCGCAG1441333GATGAGGTGGTGGAGGAAGATTTCACGGAGTACTCCGGGAGCGAGTGTAC
Cenchrus purpureus cultivar elephant grass chromosome A3.
CP053456.1:10857534-10857553
TGCCCCCCCCCCACCCCCAAATCCACCATG10857534GATGAGGTGGTGGAGGAAGAGAAAGAGAGGAGAAGGAGGAAGAAAAGAAA
Gossypium herbaceum isolate Zhongcao1 chromosome 12.
CP106691.1:19462141-19462160
AGAGCGAAGACAGAAGCGGCGGAAGTGGAG19462141GATGAGGTGGTGGAGGAAGAGAAAACTCCGTCGCTCTGGTGATCTTTCGA
Gossypium rotundifolium isolate GPK201 chromosome 12.
CP106733.1:18928228-18928247
AGAGCGAAGACAGAAGCGGCGGAAGTTGAG18928228GATGAGGTGGTGGAGGAAGAGAAAACTCCGTCGCTCTGGTGATCTTTCGA
Zea mays cultivar LT2357 chromosome 5.
CP116743.1:202268047-202268066
AAGGAAGAGGATAACGAGGTGGAAGAAGAG202268047GATGAGGTGGTGGAGGAAGAGGAAGAAGAAGAGGAAGTGGAAGAGGAGAT
Avena eriantha genome assembly, chromosome: 4C.
OU342743.1:447473345-447473364
CACGAACCATAGAAGAACTTGCTGCAGGTT447473345GATGAGGTGGTGGAGGAAGAGCTTTGTTGTTCAATGGACAACTCCAGTGT
Dunaliella primolecta genome assembly, chromosome: 13.
OU611763.1:1869520-1869539
TTGGGGCCATTGAGGTTCGAAGGCAGTGAG1869520GATGAGGTGGTGGAGGAAGAGGAGGAGGTGAGTGGAGATGAGGATGAGGC
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 2.
OX392548.1:1210980-1210999
CTAGAAGAGTTGTTCATACCTATATTTGGT1210980GATGAGGTGGTGGAGGAAGACGGATATTGAGACCCTAGAAAGCTCATAGC
Sambucus nigra genome assembly, chromosome: 9.
OX422215.1:610922004-610922023
TGGCGGCAGAAGGTGGTGATGGTGGAGGAA610922004GATGAGGTGGTGGAGGAAGATGAGGTGGTAGCTAAAAGGGTTGGTATCTA
Hordeum bulbosum genome assembly, chromosome: 3H_1.
OY737491.1:455237079-455237098
TTGAGGAGGGTTTCTGTCGGAGTGATAGAC455237079GATGAGGTGGTGGAGGAAGAACTTTTAGCTATACTAGGTCGGGCCAAAGG
Logfia minima genome assembly, chromosome: 8.
OY992770.1:26779213-26779232
AATAGTTGATCTTTGTTCCATGTTGTAGTT26779213GATGAGGTGGTGGAGGAAGAAGGAGCTTCTATTGCTTCATTCAGTTAAAC
Triticum timopheevii genome assembly, chromosome: 6G.
OY997272.1:7641963-7641982
CCTCCCCCCTTGGTCGTTGTCATCTCAAAC7641963GATGAGGTGGTGGAGGAAGACCTCGAGGAGGTGGAGTTCGCCTCCGGTGA
Cerceris rybyensis genome assembly, chromosome: 13.
OU342801.1:2427039-2427058
GAGACGGAGAAGAAGGAGGAGGATGACGAT2427039GATGAGGTGGTGGAGGAAGAGGAGAGGCAGACGGATCAAGATAAAAGTGC
Dolichovespula media genome assembly, chromosome: 4.
OU426854.1:8010201-8010220
TGTGGTGGTGGTTATGGTGGTGGTGGTGGT8010201GATGAGGTGGTGGAGGAAGAGGAGGGAGGAAACGTATCGTTTCGGAAGAA
Trichobilharzia regenti genome assembly, chromosome: 1.
OX235262.1:14645136-14645155
GAGGAGGAGGACGTAGATGATGATGATGAC14645136GATGAGGTGGTGGAGGAAGATGAAGATGGGGAACGCGCTTTCATCGATTT
Eudemis profundana genome assembly, chromosome: 2.
OX344796.1:9194585-9194604
GAGCACAGTATACCGGACTGGACAACCGCA9194585GATGAGGTGGTGGAGGAAGAGAAATTATCCTGGGCAATAAAATCATTCTC
Eudemis profundana genome assembly, chromosome: 10.
OX344804.1:7261533-7261552
GAGCACAGTATACCGGACTGGACAACCGCA7261533GATGAGGTGGTGGAGGAAGAGAAATTATCCTGGGCAATAAAATCATTCTC
Eudemis profundana genome assembly, chromosome: 21.
OX344815.1:6715887-6715906
GAGCACAGTATACCGGACTGGACAACCGCA6715887GATGAGGTGGTGGAGGAAGAGAACTTATCCTGGGCAATAAAATCATTCTC
Eudemis profundana genome assembly, chromosome: 21.
OX344815.1:10275371-10275390
GAGCACAGTATACCGGACTGGACAACCGCA10275371GATGAGGTGGTGGAGGAAGAGAACTTATCCTGGGCAATAAAATCATTCTC
Lochmaea crataegi genome assembly, chromosome: 5.
OX387427.1:43456436-43456455
AGAAAATTTTACTTGGACGGACCAACCATA43456436GATGAGGTGGTGGAGGAAGAGGAAGTGGATGAGAGTCGGAAGAAGAAGAG
Lochmaea crataegi genome assembly, chromosome: 5.
OX387427.1:43686740-43686759
AGAAAATTTTACTTGGACGGACCAACCATA43686740GATGAGGTGGTGGAGGAAGAGGAAGTGGATGAGAGTCGGAAGAAGAAGAG
Lochmaea crataegi genome assembly, chromosome: 7.
OX387429.1:41667146-41667165
AGAAAATTTTACTTGGACGGACCAACCATA41667146GATGAGGTGGTGGAGGAAGAGGAAGTGGATGAGAGTCGGAAGAAGAAGAA
Conomelus anceps genome assembly, chromosome: 10.
OX418226.1:22828340-22828359
AAGGAGAAGTAGAATAAGAAGGAGGAGGGT22828340GATGAGGTGGTGGAGGAAGAGTGGTTAGGAGGGAGAGGAGAATGGAAGGG
Lochmaea capreae genome assembly, chromosome: 3.
OX421397.1:29240658-29240677
AGAAAATTTTACTTGGACGGACCAACCATA29240658GATGAGGTGGTGGAGGAAGAGGATGAGAGTCGGAAGAAGAGAAAAGAAGG
Lochmaea capreae genome assembly, chromosome: 10.
OX421404.1:5911216-5911235
AGAAAATTTTACTTGGACGGACCAACCATA5911216GATGAGGTGGTGGAGGAAGAGGATGAGAGTCGGAAGAAGAGAAAAGAAGG
Lochmaea capreae genome assembly, chromosome: 10.
OX421404.1:6728130-6728149
AGAAAATTTTACTTGGACGGACCAACCATA6728130GATGAGGTGGTGGAGGAAGAGGATGAGAGTCGGAAGAAGAGAAAAGAAGG
Lochmaea capreae genome assembly, chromosome: 14.
OX421408.1:28964885-28964904
AGAAAATTTTACTTGGACGGACCAACCATA28964885GATGAGGTGGTGGAGGAAGAGGATGAGAGTCGGAAGAAGAGAAAAGAAGG
Microchrysa polita genome assembly, chromosome: 1.
OX454415.1:116159923-116159942
TGCCGGTCATGGGAAATCGCCTCTCTGGAA116159923GATGAGGTGGTGGAGGAAGAGTTGTCGCGACAAATTTATTCAGCTTCGTG
Cepaea hortensis genome assembly, chromosome: 19.
OY992894.1:77848592-77848611
GAAGAAGAAGAAAAGGAGGAATAAGAGGAG77848592GATGAGGTGGTGGAGGAAGAAGAAGAGGAGATGGAAGAAGAAGTAGAGGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GATGAGGTGGTGGAGGAAGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GATGAGGTGGTGGAGGAAGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.785 | 0.776 | search_plus_done; http://172.18.8.135:50400/match?q=GATGAGGTGGTGGAGGAAGA&k=0&no_gap=0&offset=0&limit=50
0.938 | 0.153 | search_minus_done; http://172.18.8.135:50400/match?q=TCTTCCTCCACCACCTCATC&k=0&no_gap=0&offset=0&limit=0
0.938 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).