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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 18:56:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

46RDOAG_UP_007_F12_24SEP2004_086 O. Alba 46RDOAG Brassica oleracea cDNA 5', mRNA sequence.
EE530646.1:187-208
CAATGCTTATGGCATAGCAGAAGTAGGTGT187GATGATGGTGAGCACAGTGTTGGTAACACTAGTGATGCTTCTCATTTGGCAA
0176619 Brassica napus Leaf - drought Brassica napus cDNA, mRNA sequence.
EV207912.1:317-338
CAATGCTTATGGCATAGCAGAAGTAGGTGT317GATGATGGTGAGCACAGTGTTGGTAACACTAGTGATGCTTCTCATTTGGCAA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_12137.
FX660976.1:1491-1512
AAATGCTTACGGCATAGCTGAAGTAGGTGT1491GATGATGGTGAGCACAGTGTTGGTAACACTAGTGATGCTTCTCATCTGGCAA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_2808.
FX698365.1:1715-1736
CAATGCTTATGGCATAGCAGAAGTAGGTGT1715GATGATGGTGAGCACAGTGTTGGTAACACTAGTGATGCTTCTCATTTGGCAA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_18296.
FX726899.1:1604-1625
CAATGCTTATGGCATAGCTGAAGTAGGTGT1604GATGATGGTGAGCACAGTGTTGGTAACACTAGTGATGCTTCTCATCTGGCAA
TSA: Pachycladon cheesemanii 46274_523_2859_5_41.Pachleaf mRNA sequence.
JP979765.1:149-170
CAATGCTTACGGCATAGCAGAGGTAGGTGT149GATGATGGTGAGCACAGTGTTGGTAACACTAGTGATGCTTCTCATTTGGCAA
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:18207423-18207444
CTTTTATTCAGGCATAGCAGAAGTAGGTGT18207423GATGATGGTGAGCACAGTGTTGGTAACACTAGTGATGCTTCTCATTTGGCAA
Capsella bursa-pastoris isolate WGS_leaf chromosome 10.
CP144192.1:2021014-2021035
TCTTATTTCAGGCATAGCAGAGGTAGGTGT2021014GATGATGGTGAGCACAGTGTTGGTAACACTAGTGATGCTTCTCATTTGGCAA
Brassica rapa genome, scaffold: A01.
LR031571.1:24848982-24849003
TCTTGTTTCAGGCATAGCAGAAGTAGGTGT24848982GATGATGGTGAGCACAGTGTTGGTAACACTAGTGATGCTTCTCATTTGGCAA
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:8850217-8850238
TCTTGTTTCAGGCATAGCTGAAGTAGGTGT8850217GATGATGGTGAGCACAGTGTTGGTAACACTAGTGATGCTTCTCATCTGGCAA
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:25368531-25368552
TCTTGTTTCAGGCATAGCAGAAGTAGGTGT25368531GATGATGGTGAGCACAGTGTTGGTAACACTAGTGATGCTTCTCATTTGGCAA
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:8850217-8850238
TCTTGTTTCAGGCATAGCTGAAGTAGGTGT8850217GATGATGGTGAGCACAGTGTTGGTAACACTAGTGATGCTTCTCATCTGGCAA
Lepidium didymum genome assembly, chromosome: 15.
OY986987.1:1802975-1802996
TCTTGTTTCAGGCATAGCAGAGGTGGGTGT1802975GATGATGGTGAGCACAGTGTTGGTAACACTAGTGATGCTTCTTATATGGCAA
RS2DQ44TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY939020.1:697-718
TTGCCAAATGAGAAGCATCACTAGTGTTAC697CAACACTGTGCTCACCATCATCACACCTACTTCAGCTATGCCTGAAACAAGA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_8684.
FX726458.1:1147-1168
TTGCCAAATGAGAAGCATCACTAGTGTTAC1147CAACACTGTGCTCACCATCATCACACCTACTTCTGCTATGCCATAAGCATTG
TSA: Pachycladon fastigiatum 113941_2399_18850_7_41.Pafaleaf mRNA sequence.
JP999853.1:1108-1129
TTGCCAAATGAGAAGCATCACTAGTGTTAC1108CAACACTGTGCTCACCATCATCACACCTACCTCTGCTATGCCGTAAGCATTG
TSA: Raphanus sativus RS10590 mRNA sequence.
JT795137.1:1286-1307
TTGCCAAATGAGAAGCATCACTAGTGTTAC1286CAACACTGTGCTCACCATCATCACACCTACTTCTGCTATGCCATAAGCATTG
TSA: Chorispora bungeana CK_39895 mRNA sequence.
KA027962.1:1208-1229
TTGCCAAATTAGAAGCATCACTAATGTTAC1208CAACACTGTGCTCACCATCATCACACCTACCTCTGCTATGCCGTAAGCATTG
TSA: Chorispora bungeana T_16423 mRNA sequence.
KA053253.1:1141-1162
TTGCCAAATTAGAAGCATCACTAATGTTAC1141CAACACTGTGCTCACCATCATCACACCTACCTCTGCTATGCCGTAAGCATTG
BH_PBa017B17.F BH_PBa Boechera holboellii genomic 5', genomic survey sequence.
KS384810.1:871-892
TTGCCAAATGAGAAGCATCACTAGTGTTAC871CAACACTGTGCTCACCATCATCACACCTACCTCTGCTATGCCTGAAACAGGA
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:33486884-33486905
TTGCCAAATGAGAAGCATCACTAGTGTTAC33486884CAACACTGTGCTCACCATCATCACACCTACTTCTGCTATGCCTGAAACAAGA
Brassica napus genome assembly, chromosome: A01.
HG994355.1:20145825-20145846
TTGCCAAATGAGAAGCATCACTAGTGTTAC20145825CAACACTGTGCTCACCATCATCACACCTACTTCTGCTATGCCTGAAACAAGA
Brassica napus genome assembly, chromosome: C01.
HG994365.1:32271270-32271291
TTGCCAAATGAGAAGCATCACTAGTGTTAC32271270CAACACTGTGCTCACCATCATCACACCTACTTCTGCTATGCCTGAATAAAAG
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:32011183-32011204
TTGCCAAATGAGAAGCATCACTAGTGTTAC32011183CAACACTGTGCTCACCATCATCACACCTACTTCTGCTATGCCTGAATAAAAG
Arabidopsis arenosa genome assembly, chromosome: 2.
LR999452.1:3345220-3345241
TTGCCAAATGAGAAGCATCACTAGTGTTAC3345220CAACACTGTGCTCACCATCATCACACCTACCTCTGCTATGCCTGAAATAAGA
Thlaspi arvense genome assembly, chromosome: 2.
OU466858.1:64593334-64593355
TTGCCAAATGAGAAGCATCACTAGTGTTAC64593334CAACACTGTGCTCACCATCATCACACCTACCTCTGCTATGCCTGAATCAAGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GATGATGGTGAGCACAGTGTTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GATGATGGTGAGCACAGTGTTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.407 | 0.399 | search_plus_done; http://172.18.8.135:50400/match?q=GATGATGGTGAGCACAGTGTTG&k=0&no_gap=0&offset=0&limit=50
0.727 | 0.319 | search_minus_done; http://172.18.8.135:50400/match?q=CAACACTGTGCTCACCATCATC&k=0&no_gap=0&offset=0&limit=37
0.735 | 0.008 | cgi_end;

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